Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D16
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     28   1.6  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    27   3.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.6  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   4.8  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    27   4.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   8.4  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   8.4  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    26   8.4  

>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 281 KIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLNE 394
           K+E +  L+N+D + +K+ YN      VSP   G LN+
Sbjct: 19  KVEMKPFLKNLDKNLFKKTYNLVAAK-VSPKKVGLLNK 55


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 389 NEQLNWLLSYAVRLEYADNVDXYKNAKVEEKKKAPQCP 502
           +E    LL YA+ +E  DNV  Y  AK+++     +CP
Sbjct: 118 SETYQQLLEYALEVERDDNVFTY--AKLQKSDMTQKCP 153


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 480 FSSTLAFLYXSTLSAYSNRTAYDNSQLSCSFSVPSAAGLTKS 355
           FSSTL+    S+ S++S+     +S +S S S PS++  + +
Sbjct: 317 FSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSST 358


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +1

Query: 754 PPXFRKPLXCXXQPGYMLDPPTRFPKPPSHYXXXXRSPP 870
           PP   KP      P    +P    P PP H+      PP
Sbjct: 210 PPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 248


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 161 LFKLKLSALGHPNPEFFNCEDE--KEYRSVV-LWLE 259
           L K +LS L H NPE F  ++E  K+Y     LW +
Sbjct: 138 LLKTQLSNLNHCNPETFELKNENTKKYMEAANLWTD 173


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/51 (21%), Positives = 23/51 (45%)
 Frame = +2

Query: 422  VRLEYADNVDXYKNAKVEEKKKAPQCPVFXSIXPSGLLQSSIPSRCHXVCT 574
            + ++ +D  D Y+NAKV+E +      ++ S+    +        C  + T
Sbjct: 2564 LEIQLSDKYDMYQNAKVQESRADAVAELYASLNEDDMFYGHWRRNCKYLQT 2614


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +2

Query: 239 SVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY-----NTYQKDLVSPAAEGTLNEQLN 403
           S++ W  D+++R+Y   D + L ++  DF   ++     +T Q  ++       +N   N
Sbjct: 353 SIIYWDADKELRNYPRLDAKKLWDLTEDFLDLSFSLSRLSTLQAAIIFLTGRPWINVAGN 412

Query: 404 W-LLSYAVRL 430
           W +L+ A+ L
Sbjct: 413 WSILTRAIAL 422


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 80  VELHLDNFVKFTPTCYLKTYSFLTMSNLFKLKLSA 184
           V  HLD FVK  P  Y + +S    SNL ++ +S+
Sbjct: 242 VSKHLDGFVKILP--YDRVFSDAKNSNLTRIGISS 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,942
Number of Sequences: 5004
Number of extensions: 58825
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)