Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_D16
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1125 + 31085106-31085714 34 0.13
06_03_0905 + 25843547-25844314 31 1.2
05_06_0190 - 26260743-26261198,26261261-26261355,26261425-26262181 30 2.2
01_01_0715 - 5542648-5543219,5543352-5543544 30 2.2
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 30 2.9
07_01_0756 + 5819367-5820038,5820847-5821005 30 2.9
03_06_0386 + 33555682-33556344,33557138-33557299 30 2.9
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 29 5.0
04_03_0904 + 20717005-20718087 29 6.7
03_02_0371 + 7858170-7859624 29 6.7
12_02_1174 - 26696869-26698191 28 8.8
>04_04_1125 + 31085106-31085714
Length = 202
Score = 34.3 bits (75), Expect = 0.13
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +2
Query: 698 PPTCVKXPRL-VPXXPTXPXPRXSGSXXFAXXNXVTCWTPQPDSPNPXPTTXXXXGPPP 871
PP C P P PT P + T WTP P +P P P T PP
Sbjct: 41 PPPCQPPPPTPTPATPTTPPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATPTTPP 99
>06_03_0905 + 25843547-25844314
Length = 255
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/60 (35%), Positives = 21/60 (35%)
Frame = +2
Query: 698 PPTCVKXPRLVPXXPTXPXPRXSGSXXFAXXNXVTCWTPQPDSPNPXPTTXXXXGPPPNT 877
PP V P P P P G VT TP P P PTT PPP T
Sbjct: 111 PPVVVGPPVTYPTPPVTTPPVVVGPPVTYPTPPVTYPTPPVTYPTP-PTTTPCPPPPPAT 169
>05_06_0190 - 26260743-26261198,26261261-26261355,26261425-26262181
Length = 435
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 215 CEDE--KEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY 340
C DE K + S++L+ +++H + ++D D WKE Y
Sbjct: 221 CRDERVKSHFSLILFYNGDELKHETVATFRDRCDVDEDTWKELY 264
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 731 PXXPTXPXPRXSGSXXFAXXNXVTCWTPQPDSPNPXPTTXXXXGPPP 871
P P P PR S A N T P P P P P PPP
Sbjct: 149 PTVPAAPTPRPSPPPPAAGTNG-TARAPSPPVPAPAPAGSPPPPPPP 194
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +1
Query: 730 PGXPNFXXPPXFRKPLXCXXQPGYMLD--PPTRFPKPP 837
P PN PP PL C PG L P R P PP
Sbjct: 439 PSVPNTAAPPAPLSPLICTTLPGSPLPQISPLRGPSPP 476
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 92 LDNFVKFTPTCYLKTYSFLT 151
L NFVK T C +KTY FLT
Sbjct: 219 LGNFVKATFDCLMKTYGFLT 238
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 92 LDNFVKFTPTCYLKTYSFLT 151
L NFVK T C +KTY FLT
Sbjct: 216 LGNFVKATFDCLMKTYGFLT 235
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 29.1 bits (62), Expect = 5.0
Identities = 30/140 (21%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Frame = +2
Query: 86 LHLDNFVKFTPTCYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRSVVLWLEDQ 265
+ ++N +F P + ++ LT L + A+G PN ++R ++ ++
Sbjct: 158 IQVNNLTQFLPQDRVCEFAKLTPIQLLEETEKAVGDPNLPI-------QHRQLIDRSKEL 210
Query: 266 KIRHYKIEDRE----GLRNIDSDFWKEAYNTYQKDLVSPAAEGTLNEQLNWLLSYAVRLE 433
KI ++ +E L+ ++++ K+ Q+D + AE + ++L WL + E
Sbjct: 211 KILQVAVKQKEQTLNNLKALNAELEKDVERVRQRDRLLKKAE-LMKKKLPWLKYDMKKKE 269
Query: 434 Y--ADNVDXYKNAKVEEKKK 487
Y A + + K+EE K
Sbjct: 270 YKEAQEKEKTEKKKMEEVAK 289
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +2
Query: 698 PPTCVKXPRLVPXX-PTXPXPRXSGSXXFAXXNXVT-CWTPQPDSPNPXPTTXXXXGPPP 871
PPT P+ P P P P+ + S +TP P P P GPPP
Sbjct: 299 PPTYKPQPKPTPTPTPYKPQPKPTPSPYTPKPTPTPPTYTPTPTPPYHKPPPSYTPGPPP 358
>03_02_0371 + 7858170-7859624
Length = 484
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -1
Query: 507 KTGHWGAFFFSSTLAFLYXSTLSAYSNRTAYDNSQLSCSFSVPSAA 370
K W S LAFL S +A + R A D+ + S S PSAA
Sbjct: 48 KLAFWSVCSLSLLLAFLLLSPSAAPAPRAAPDSPRRSLHTSSPSAA 93
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/58 (27%), Positives = 22/58 (37%)
Frame = +2
Query: 698 PPTCVKXPRLVPXXPTXPXPRXSGSXXFAXXNXVTCWTPQPDSPNPXPTTXXXXGPPP 871
P VK PR++ P+ P P + P+P P P P + PPP
Sbjct: 251 PRAPVKMPRVLEPKPSPPPPSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPP---PPP 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,206,718
Number of Sequences: 37544
Number of extensions: 442619
Number of successful extensions: 1233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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