Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_D16
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 31 1.1
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 31 1.1
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 31 1.1
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 31 1.1
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 29 3.4
AF016682-9|AAB66189.3| 441|Caenorhabditis elegans Hypothetical ... 29 3.4
AF016682-8|AAO38605.1| 422|Caenorhabditis elegans Hypothetical ... 29 3.4
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 29 3.4
U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 29 6.0
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 62 YLCYRHVELHLDNFVKFTPTCYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRS 241
++CY LH V F Y+ +Y + + +L+ L EF E+E ++
Sbjct: 1520 HMCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLE-ELLQREELEFI-IEEEVAKQT 1577
Query: 242 VVLWLED--QKIRHYKIEDREGL 304
+ WLE +K+R+ +D EG+
Sbjct: 1578 IRTWLEGCLRKMRNPSQKDAEGV 1600
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 62 YLCYRHVELHLDNFVKFTPTCYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRS 241
++CY LH V F Y+ +Y + + +L+ L EF E+E ++
Sbjct: 1554 HMCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLE-ELLQREELEFI-IEEEVAKQT 1611
Query: 242 VVLWLED--QKIRHYKIEDREGL 304
+ WLE +K+R+ +D EG+
Sbjct: 1612 IRTWLEGCLRKMRNPSQKDAEGV 1634
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 62 YLCYRHVELHLDNFVKFTPTCYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRS 241
++CY LH V F Y+ +Y + + +L+ L EF E+E ++
Sbjct: 1665 HMCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLE-ELLQREELEFI-IEEEVAKQT 1722
Query: 242 VVLWLED--QKIRHYKIEDREGL 304
+ WLE +K+R+ +D EG+
Sbjct: 1723 IRTWLEGCLRKMRNPSQKDAEGV 1745
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 62 YLCYRHVELHLDNFVKFTPTCYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRS 241
++CY LH V F Y+ +Y + + +L+ L EF E+E ++
Sbjct: 1584 HMCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLE-ELLQREELEFI-IEEEVAKQT 1641
Query: 242 VVLWLED--QKIRHYKIEDREGL 304
+ WLE +K+R+ +D EG+
Sbjct: 1642 IRTWLEGCLRKMRNPSQKDAEGV 1664
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 721 PFGPGXPNFXXPPXFRKPLXCXXQPGYMLDPPTRFPKP 834
PFGP P PP +R+P +P + L PP P+P
Sbjct: 52 PFGPPPPWDRPPPPWRRP-PWHRRPPWGLPPPPPPPEP 88
>AF016682-9|AAB66189.3| 441|Caenorhabditis elegans Hypothetical
protein T07D3.9a protein.
Length = 441
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 77 HVELHLDNFVKFTPTCYLKTYSFLTMSNLFKL-KLSALGHP 196
HV LH D+FV +T Y++ T+S+ KL +L+ L HP
Sbjct: 347 HV-LHFDSFVTYTDGKYVQVKVAATISDQHKLPELAKLNHP 386
>AF016682-8|AAO38605.1| 422|Caenorhabditis elegans Hypothetical
protein T07D3.9b protein.
Length = 422
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 77 HVELHLDNFVKFTPTCYLKTYSFLTMSNLFKL-KLSALGHP 196
HV LH D+FV +T Y++ T+S+ KL +L+ L HP
Sbjct: 302 HV-LHFDSFVTYTDGKYVQVKVAATISDQHKLPELAKLNHP 341
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 721 PFGPGXPNFXXPPXFRKPLXCXXQPGYMLDPPTRFPKPPS 840
P PG P PP + P QPG+ P T PK P+
Sbjct: 217 PITPGAPGPAGPPGPQGPPGAPGQPGHDGQPGTPGPKGPN 256
>U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical
protein F57F4.1 protein.
Length = 461
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 86 LHLDNFVKFTPTCYLKTYSFLTMSNLFKL-KLSALGHP 196
LHLD+FV +T YL+ ++S+ KL +L+ L HP
Sbjct: 369 LHLDSFVTYTDGKYLQMKVAASISDQNKLPELAKLNHP 406
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
protein C09H6.1b protein.
Length = 1309
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 98 NFVKFTPTCYL-KTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEY-RSVVLWLEDQKI 271
N K PT + T + N + K+ L C +E +S+ LW + +K+
Sbjct: 630 NHEKLHPTVVVANTNEAPVVKNEIEAKVEVLSKTVSSPVECTEESSLSKSIQLWCQREKL 689
Query: 272 RHYKIEDREGLRNID 316
RH +++++ + ID
Sbjct: 690 RHPELDEQFTRKMID 704
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
protein C09H6.1a protein.
Length = 1311
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 98 NFVKFTPTCYL-KTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEY-RSVVLWLEDQKI 271
N K PT + T + N + K+ L C +E +S+ LW + +K+
Sbjct: 630 NHEKLHPTVVVANTNEAPVVKNEIEAKVEVLSKTVSSPVECTEESSLSKSIQLWCQREKL 689
Query: 272 RHYKIEDREGLRNID 316
RH +++++ + ID
Sbjct: 690 RHPELDEQFTRKMID 704
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,634,180
Number of Sequences: 27780
Number of extensions: 370541
Number of successful extensions: 964
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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