Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D14
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   4.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.9  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    26   6.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 758  PPVSPILPLAPXQXTPLG-PSRTXPVXPXPGDQ 853
            PP +P +P  P    P   P+ + P  P PGD+
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 755 NPPVSPILPLAPXQXTPLGPSRTXPVXPXPGDQ 853
           +PP SP  P+AP    P   S + P  P P  +
Sbjct: 266 SPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSR 298


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 116 IANTXEKFHFVRSLSDRLQVCK--SKIFKEFPI 24
           +AN   K + + +LSDRL  CK    + +++P+
Sbjct: 482 LANADPKMYLLENLSDRLYFCKLAKLLLRKYPL 514


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/46 (39%), Positives = 18/46 (39%)
 Frame = +1

Query: 757  PPXFPHSTTRPXPTNSLGTLXYXPGXTXPRGPTAXAXSXXPLVXXP 894
            PP  P ST  P PT S G L   P  T    P     S  P V  P
Sbjct: 1208 PPVPPPSTAPPVPTPSAG-LPPVPVPTAKAPPVPAPSSEAPSVSTP 1252



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +1

Query: 757  PPXFPHSTTRPXPTNSLGTLXYXPGXTXPRGPTAXA 864
            PP  P S   P P  S+G     P  T P  PT  A
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSA 1224


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 270 SIIQNVVNNLIIDXRRNTXEYCYXLWVGNGQEIVTKYF 383
           +II   V+N I+D   +  ++C  +W G   + +  ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,772
Number of Sequences: 5004
Number of extensions: 45228
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)