Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D14
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0081 + 20745627-20748144,20748211-20748308                       31   0.96 
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   5.1  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    29   6.8  
11_05_0068 - 18782658-18782984,18784634-18784783,18784853-187857...    28   9.0  

>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = +2

Query: 650 PPGPXXYTXXPPXGWTXTRGSQWXXXXXXXXXXKXNPPVSPILPLAPXQXTPLGPSRTXP 829
           PP P  +   P  GWT +  +                P++PI   AP + TP  P+   P
Sbjct: 70  PPAPAPHLVVPHGGWTVSPTTDNDRFGDGGASSSTAAPLTPIAHSAPPETTPYVPALPVP 129


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +2

Query: 755  NPPVSPILPLAPXQXTPLGPSRTXPVXPXPGDQXQXPXRXXPXXXXP 895
            +PP  P LP +P   TP  P    P  P P      P    P    P
Sbjct: 1153 SPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPP 1199


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 22/88 (25%), Positives = 32/88 (36%)
 Frame = +2

Query: 581 RSTTLTXTXYXXMTYPTTCHLQPPPGPXXYTXXPPXGWTXTRGSQWXXXXXXXXXXKXNP 760
           RS++ T T    +  P +    P P P   T  PP      R  +           +  P
Sbjct: 39  RSSSPTQTTLQQLHSPDSPPPPPLPTPTVTTPTPPPPPPAPRPPR--------RHHRIPP 90

Query: 761 PVSPILPLAPXQXTPLGPSRTXPVXPXP 844
           P  P+LP  P     + P+   P+ P P
Sbjct: 91  PPPPLLPTPPPPPASISPTPAPPLPPPP 118


>11_05_0068 -
           18782658-18782984,18784634-18784783,18784853-18785716,
           18785877-18786005,18786112-18786188,18786507-18786607,
           18786772-18786896
          Length = 590

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 390 LMGSTL*QFPVRCRPTAXSSTPXCSVSXQ 304
           L+ ST+   P  CRP + SS P C++  +
Sbjct: 23  LLSSTVDSSPAACRPISDSSYPDCAMEEE 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,513,283
Number of Sequences: 37544
Number of extensions: 365844
Number of successful extensions: 965
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)