Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_D12
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.8
08_01_0059 - 394001-394708 29 5.0
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 29 5.0
01_01_0070 - 542603-542686,542803-543441 29 5.0
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 6.6
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 29 6.6
12_02_0299 - 17051570-17052474,17053542-17053755 28 8.7
06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150... 28 8.7
04_04_1125 + 31085106-31085714 28 8.7
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 28 8.7
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 787 AXPXPQXPLGKXPXXXAPXPAIXPPXXSPPXXPNP 891
A P P P G P P PA PP PP P+P
Sbjct: 334 AAPPPPPPKGPPP----PPPAKGPPPPPPPKGPSP 364
>08_01_0059 - 394001-394708
Length = 235
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 787 AXPXPQXPLGKXPXXXAPXPAIXPPXXSPP 876
A P P PL P +P PA PP SPP
Sbjct: 44 APPPPSHPLAPPPPHISP-PAPVPPPPSPP 72
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -2
Query: 299 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 135
L+++ L+ W + P L + S L SP + SF S + S D++T
Sbjct: 36 LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95
Query: 134 TPALAASMHIANTTR 90
P A+ +A TTR
Sbjct: 96 VPTTTAAARVAATTR 110
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 793 PXPQXPLGKXPXXXAPXPAIXPPXXSPPXXPNP 891
P P P P P P PP PP P P
Sbjct: 82 PPPPTPKKAPPPPVTPPPVTPPPVTPPPVSPPP 114
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +1
Query: 793 PXPQXPL--GKXPXXXAPXPAIXPPXXSPPXXPNP 891
P PQ P P AP P + PP PP P P
Sbjct: 31 PPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPP 65
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 738 PSPNSTMPWPPARILXXXPXXPXPPWQTP 824
P P T+P PP R L P P PP Q P
Sbjct: 48 PPPQPTLPPPPPRTL--PPPPPPPPPQPP 74
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Frame = +1
Query: 793 PXPQXPLGKXPXXXAPXPAI----XPPXXSPPXXPNP 891
P P P P AP PA PP SPP P P
Sbjct: 256 PPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPP 292
>06_01_0194 +
1503350-1503554,1504399-1504490,1504835-1504935,
1506186-1506276,1506616-1506674,1506764-1506884,
1506959-1507027,1507321-1507373,1507688-1507796,
1507895-1508065,1508148-1508306,1508561-1508650,
1508751-1508933,1509837-1510027,1510340-1510787
Length = 713
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = -1
Query: 891 GVRXGRG*XXGGXDGRXXGXXXRXFAKGXLGXGXGXXGFGRG 766
G GRG GG GR G G G G G G GRG
Sbjct: 664 GGSRGRGRGRGGGGGRGRGGGGGGGRGGGGGGGGGRGGRGRG 705
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = +3
Query: 738 PSPNSTMPWPPARILXXXPXXPXPPWQTPXXXRPXXCHXTPXXXTPXXTEP 890
P+P P P P P PP TP P TP T P
Sbjct: 49 PTPTPATPTTPPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATPTTPP 99
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 793 PXPQXPLGKXPXXXAPXPAIXPPXXSPPXXPNP 891
P PQ P P P PA P PP P P
Sbjct: 123 PPPQPPRAWDPSPPPPPPAPAAPVLVPPPAPAP 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,025,781
Number of Sequences: 37544
Number of extensions: 403866
Number of successful extensions: 1789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1724
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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