Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_D12
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 33 0.36
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.6
AF022975-1|AAB70675.3| 587|Caenorhabditis elegans Hypothetical ... 29 3.4
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 29 4.5
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81055-9|CAB02898.3| 562|Caenorhabditis elegans Hypothetical pr... 28 7.8
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 28 7.8
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 28 7.8
AF067947-5|AAO25993.2| 380|Caenorhabditis elegans Hypothetical ... 28 7.8
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 107 CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 262
CA + A ++LNY RT L+ +NC P TT + + A N + AP
Sbjct: 38 CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 793 PXPQXPLGKXPXXXAPXPAIXPPXXSPPXXPNP 891
P P P G P P P PP PP P P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 793 PXPQXPLGKXPXXXAPXPAIXPPXXSPPXXPNP 891
P P P G P P P PP PP P P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 793 PXPQXPLGKXPXXXAPXPAIXPPXXSPPXXPNP 891
P P P G P P P PP PP P P
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358
>AF022975-1|AAB70675.3| 587|Caenorhabditis elegans Hypothetical
protein K09C6.7 protein.
Length = 587
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 565 KYTGWSPTRX*XXN*RVQYAXLHHRRRQFXHSRDWLWNRASERGCS 428
+YT +P R + R + HRR+++ R W+ RA + G S
Sbjct: 144 RYTCSAPQRKAARHLRWDWTLARHRRKRYQKYRRWMAGRAKKMGLS 189
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = -1
Query: 468 GIGCGTELQS----EXVVSVNDLDIVSGHDECKV*WEVLSNNFLSVADPQLVAVLHGVPS 301
G GCG + +S E V+++ D D+ ++E + EVL NN S LV+V +P+
Sbjct: 63 GCGCGRKKRSVDDVEGVINM-DSDVECNNEELR---EVLENNMKSTPSDSLVSVRSNLPT 118
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 165 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 275
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>Z81055-9|CAB02898.3| 562|Caenorhabditis elegans Hypothetical
protein F01G10.10 protein.
Length = 562
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 334 WVGNGQEIVRKYFPL---NFTLIMAGNYVKII 420
W+ +GQEI R Y PL N + + G Y++I+
Sbjct: 13 WLSSGQEITRDYSPLLDKNTSAVNPGIYLRIM 44
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 165 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 275
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 165 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 275
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>AF067947-5|AAO25993.2| 380|Caenorhabditis elegans Hypothetical
protein T10B5.2 protein.
Length = 380
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 565 KYTGWSPTRX*XXN*RVQYAXLHHRRRQFXHSRDWLWNRASERG 434
+YT +P R + R + HRR+++ R W+ RA + G
Sbjct: 28 RYTCSAPQRKAARHLRWDWTLTRHRRKRYQKYRRWMEGRAKKMG 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,890,906
Number of Sequences: 27780
Number of extensions: 308608
Number of successful extensions: 1054
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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