Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D10
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.041
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   0.87 
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    28   2.0  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   6.1  
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce...    26   8.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = -3

Query: 576 APRTR*SPARWPRSTPQRSS--DRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCS 403
           AP T  S  R P S P R S    S +S  P+ S    +P +  P      P V +P  +
Sbjct: 129 APPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP-VKSPPSA 187

Query: 402 QPEPSYTLPLPPTRNEGPMSQ 340
              PS   P+PP     P+SQ
Sbjct: 188 PSLPSAVPPMPPKVPPPPLSQ 208


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 531 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPL 373
           P+ S+++   S++ L SS    P +AT     LYP   APT   P  S + PL
Sbjct: 219 PRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPT--PPASSSSSPL 269


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 636 WPEWLEXVDSIQNX*HYXSRIAXRRSCCVPILEQVS 743
           W +WLE V+ +QN  +Y  +         P +E++S
Sbjct: 111 WNKWLERVEIVQNIFYYMDKTFLSHHPDYPTIEELS 146


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 366 TRNEGPMSQYCKASMWLVWIFRTSSSQPAS 277
           T+   P   Y     WLVW     +S PAS
Sbjct: 447 TQGSAPPWHYIPCQSWLVWYPSEDASNPAS 476


>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 200

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 527 CGVERGHLAGDYRVRGAPTAHCL*XPRPEALQ 622
           C  +  H+AG  ++R APT   L  PR + +Q
Sbjct: 134 CASQLKHVAGFLKMRVAPTMPALTLPRDKIVQ 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,173
Number of Sequences: 5004
Number of extensions: 55390
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)