Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_D06
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.073
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 32 0.096
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.17
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.39
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.1
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 27 3.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.4
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.7 bits (71), Expect = 0.073
Identities = 19/74 (25%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Frame = +1
Query: 595 TPPPGXXPPQXXSPKKXXPPPPXGXPPPXPXXXXXXXNXFSPP-XPXLXXXXXXXXXXXX 771
TP PP P+ PPP PP P + PP P
Sbjct: 132 TPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Query: 772 XXXPXSXPPPPSPP 813
P P P PP
Sbjct: 192 SAVPPMPPKVPPPP 205
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 32.3 bits (70), Expect = 0.096
Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Frame = +1
Query: 577 SPXKKXTPPPGXXPPQXXSPKKXXP----PPPXGXPPPXPXXXXXXXNXFSPPXPXLXXX 744
+P +PPP PP +P P PPP PPP P + P
Sbjct: 160 APNSMVSPPPSFQPPSAAAPATSLPSDYNPPP---PPPPPPAVEDQAADANEPDDYYSSG 216
Query: 745 XXXXXXXXXXXXPXSXPPPPSPP 813
P P P+PP
Sbjct: 217 RAVSPEIPPTYTPKQADPLPAPP 239
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/51 (23%), Positives = 18/51 (35%)
Frame = +1
Query: 577 SPXKKXTPPPGXXPPQXXSPKKXXPPPPXGXPPPXPXXXXXXXNXFSPPXP 729
+P + G P +P PPP PP + ++PP P
Sbjct: 142 APASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPP 192
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = +1
Query: 505 PPPXXXFXXIXPXXGXXGXXKNXFSPXKKXTP--PPGXXPPQXXSPKKXXPPPPXGXPP 675
PPP + + +S + +P PP P Q PPPP PP
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPP 248
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +1
Query: 601 PPGXXPPQXXSPKKXXPPPPXGXPPPXPXXXXXXXNXFSPPXP 729
P PPQ +P PPPP PPP +PP P
Sbjct: 1694 PQSAAPPQMSAP--TPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 29.1 bits (62), Expect = 0.90
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Frame = +1
Query: 580 PXKKXTPPPGXXPPQXXSPKKXXPPP-PXGXPPPXP 684
P PPP PP P PPP P P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Frame = +1
Query: 595 TPPPGXXPPQXXSPKKXXPP----PPXGXPPPXP 684
TPPP PP P PP PP PPP P
Sbjct: 1706 TPPP---PPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.39
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 598 PPPGXXPPQXXSPKKXXPPPPXG 666
PPP PP P + PPPP G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 601 PPGXXPPQXXSPKKXXPPPPXGXPPP 678
PPG PP P P P PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 755 PPXPPXXXXXFXXPPPPPXP 814
PP PP PPPPP P
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 755 PPXPPXXXXXFXXPPPPPXP 814
PP PP PPPPP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +1
Query: 598 PPPGXX-PPQXXSPKKXXPPPP-XGXPPPXPXXXXXXXNXFSPPXP 729
PPP P +P PP P G PPP P PP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 755 PPXPPXXXXXFXXPPPPPXP 814
PP PP PPPPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 755 PPXPPXXXXXFXXPPPPPXP 814
PP PP PPPPP P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +1
Query: 595 TPPPGXXPPQXXSPKKXXPPPPXGXPPPXPXXXXXXXNXFSPPXP 729
TP P P +P PPP PPP P PP P
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPP----PPPPPGVAGAGPPPPPPPPP 783
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 271 SRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCC 155
S+ GC +TE+ T+ C E SCC S K CC
Sbjct: 257 SQEKKGCCSTEK----TSCCSQE---KKSCCTSEKPSCC 288
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 598 PPPGXXPPQXXSPKKXXPPPPXGXPPPXP 684
PPP PP P PP PP P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -2
Query: 683 GXGGGXPXGGGGXXFLGEXXCGGXXPGGGVXFXXGENXFFXXP 555
G GG P G GG G G GG F G F P
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,104
Number of Sequences: 5004
Number of extensions: 42039
Number of successful extensions: 237
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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