Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D05
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.035
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 0.035
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +2

Query: 713 GXPXPPPXPPPXPPXPPXXPPXHTXXLPPXSXPPXPXP 826
           G P P P P   P  P    P +    PP   PP   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +1

Query: 799 PLTSPXPXXPPXXXXPLXAXPPXXXPXPXXPPPKPPS 909
           P   P P   P          P   P P  PP  PPS
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
 Frame = +2

Query: 701 RATXGXPXPPPXPPPXPPXPPXXPPXHTXXLP--PXSXPPXP 820
           R+  G   PP    P PP P          LP  P S P  P
Sbjct: 402 RSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMP 443


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 713 GXPXPPPXPPPXPPXPPXXPP 775
           G    PP P P PP P    P
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 874 PXPXXPPPKPPSXS 915
           P    PPP PPS S
Sbjct: 338 PPKPAPPPPPPSSS 351


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 713  GXPXPPPXPP 742
            G P PPP PP
Sbjct: 1855 GSPEPPPPPP 1864


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -3

Query: 819 GXGGXEXGGKXXVWXGGXXGGXGGXGGGXGGGXG 718
           G G    GG      GG     G   GG GGG G
Sbjct: 21  GPGSSSAGGVVTGASGGSIV-VGANNGGGGGGLG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,277
Number of Sequences: 438
Number of extensions: 5034
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)