Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D02
         (1237 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    26   0.67 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.88 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.88 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   8.2  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.8 bits (54), Expect = 0.67
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 848 GGGXGXGGRGXXRGXGGG 795
           GGG G GGR   RG GGG
Sbjct: 92  GGGRG-GGRDGDRGDGGG 108


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 446 LPPXXXXPXXPXPLPRXXPXPLPP 517
           LPP         PLP+  P PLPP
Sbjct: 164 LPPAGFLCNNYLPLPQVPPLPLPP 187


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 446 LPPXXXXPXXPXPLPRXXPXPLPP 517
           LPP         PLP+  P PLPP
Sbjct: 164 LPPTGFLCNNYPPLPQVPPLPLPP 187


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 519 PPXXXSPXPPSXP 557
           PP   SP PPS P
Sbjct: 115 PPLTPSPGPPSHP 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,001
Number of Sequences: 336
Number of extensions: 2506
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 36171872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)