Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D01
         (785 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    25   0.69 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   6.4  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 553 PPXXPXXSPPPQXKNPXXSP 612
           PP  P  SPPP   +P  +P
Sbjct: 21  PPHNPAYSPPPSYCDPWYNP 40


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
 Frame = +1

Query: 505 PKXXLXXXPPXFFSXPPPXXPXXSPPPQXKNPXXSPPPPXXPP---PPXXPP 651
           P   L    P +   P    P  + PP        PP P  PP   PP  PP
Sbjct: 140 PGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 551 PPPPXPXXXPP 583
           PPPP P   PP
Sbjct: 736 PPPPHPHHQPP 746


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 551 PPPPXPXXXPP 583
           PPPP P   PP
Sbjct: 628 PPPPHPHHQPP 638


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 170 HGDSWVGGEN 199
           HGD WVG E+
Sbjct: 934 HGDQWVGFED 943


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +1

Query: 577 PPPQXKNPXXSPPPPXXPPPPXXPP 651
           PP     P     PP   P P  PP
Sbjct: 61  PPHHYGGPPSGGQPPQGMPYPRFPP 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,811
Number of Sequences: 336
Number of extensions: 2604
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)