Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D01
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.20 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.80 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.80 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.6  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   7.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +1

Query: 565 PXXSPPPQXKNPXX-SPPPPXXPPPPXXPP 651
           P  SP    + P   SPP P   PPP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +1

Query: 490 SXQTXPKXXLXXXPPXFFSXPPPXXPXXSPPPQ 588
           S    P+      PP     PPP  P  +PP Q
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQ 58



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/39 (33%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
 Frame = +1

Query: 544 SXPPPXXPXXSPPPQXKNPXXSPPPPXXPP---PPXXPP 651
           S  P   P     PQ       P P   PP   PP  PP
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 16/59 (27%), Positives = 16/59 (27%)
 Frame = +1

Query: 454 PPQFFXKXXSPXSXQTXPKXXLXXXPPXFFSXPPPXXPXXSPPPQXKNPXXSPPPPXXP 630
           PP F     SP S             P     PP       P P   N    PP P  P
Sbjct: 381 PPNFGVSQVSPVSMSALVSAV---RSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMP 436


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 677  GGGGXXGGXGGFXGGGG 627
            GGGG   G GG  G GG
Sbjct: 1705 GGGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 677  GGGGXXGGXGGFXGGGG 627
            GGGG   G GG  G GG
Sbjct: 1701 GGGGSLAGLGGLGGLGG 1717


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 607 SPPPPXXPPPP 639
           +PP P  PPPP
Sbjct: 337 TPPKPAPPPPP 347


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 190 GGKPIPNXGLATFRGNXWAW 249
           G +  PN  L+ F G+ W W
Sbjct: 156 GTRQPPNNWLSVFWGSAWQW 175


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 674 GGGXXGGXGGFXGGGGXXGGGGEXXG 597
           GG   G  GG    G   GGGG   G
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGGLG 53


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 650 GGFXGGGGXXGGGG 609
           GGF G GG  G GG
Sbjct: 20  GGFGGFGGFGGLGG 33


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 650 GGFXGGGGXXGGGG 609
           GGF G GG  G GG
Sbjct: 20  GGFGGFGGFGGLGG 33


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 689  SXXPPPPPP 715
            S  PPPPPP
Sbjct: 1856 SPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,191
Number of Sequences: 438
Number of extensions: 5411
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)