Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C24
         (1108 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.12 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.12 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.16 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   2.7  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    27   4.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 37  PXXXPPXPXPPPXXXPXXXPXPRPP 111
           P   PP P PPP   P   P P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 30.3 bits (65), Expect = 0.50
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 30  SXPXPXXPPXXPSPXXXPXXXPXPPPP 110
           S P    PP  P P   P   P PPPP
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 37  PXXXPPXPXPPPXXXPXXXPXPRPP 111
           P   PP P PP    P   P P PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 7  PXXPPPXXXXPXXXPPXPXPP 69
          P  PPP    P   PP P PP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 7  PXXPPPXXXXPXXXPPXPXPPP 72
          P  PPP    P   PP   PPP
Sbjct: 6  PGNPPPPPPPPGFEPPSQPPPP 27


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
 Frame = +1

Query: 7   PXXPPPXXXXPXXXPPXPXPPPXXXP---XXXPXPRPPAXXGTGDXXPXP 147
           P  PPP    P   P  P P P   P      P P PP   G G   P P
Sbjct: 732 PPPPPPAVIVPTPAPA-PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 31.9 bits (69), Expect = 0.16
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = +3

Query: 18  PXXXSXPXPXXPPXXPSPXXXPXXXPXPPPPRPXGXRGXXPXP 146
           P     P P   P  P P   P     PPPP P G  G  P P
Sbjct: 736 PPAVIVPTPAPAPI-PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 18  PXXXSXPXPXXPPXXPSPXXXPXXXPXPPPPRP 116
           P     P    PP  P P       P PPPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +1

Query: 7   PXXPPPXXXXPXXXPPXPXPPPXXXPXXXPXPRPPAXXGTG 129
           P   PP        PP P PP        P P PP     G
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +1

Query: 16  PPPXXXXPXXXPPXPXPPPXXXPXXXPXPRPPAXXGTGDXXPXP 147
           PPP        PP P P         P P PPA    G     P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +1

Query: 7    PXXPPPXXXXPXXXPPXPXPPPXXXPXXXPXPRPPAXXGTGD 132
            P  PP     P   PP P  PP   P   P    P+    GD
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGD 1748



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +1

Query: 7    PXXPPPXXXXPXXXPPXPXPPPXXXPXXXPXPRPPAXXGTGDXXPXP 147
            P   P     P    P P PPP   P     P  PA   +    P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
 Frame = +3

Query: 36   PXPXXPPXXPSPXXXPXXXPX-PPPPRPXGXRGXXPXP 146
            P P   P  PS    P   P  PPPP P       P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = +1

Query: 7    PXXPPPXXXXPXXXPPXPXPPPXXXPXXXPX-PRPPAXXGTGDXXPXP 147
            P  PPP    P   PP P  PP   P   P  P PP    +    P P
Sbjct: 1705 PTPPPP----PMSVPPPPSAPPM--PAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/43 (27%), Positives = 13/43 (30%)
 Frame = +2

Query: 23   PXXXPXPXXPPXXXLPXXPPXXXPLXPAPPPXXXPGXXPXTRP 151
            P   P    PP    P  PP    + P P     P   P   P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +3

Query: 18  PXXXSXPXPXXPPXXPSPXXXPXXXPXPPPPRPXGXRG 131
           P   + P P  PP    P       P PPP +  G RG
Sbjct: 158 PGFGNLPNPAMPPIPFLPFNPAAQPPFPPPFKMRGKRG 195


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 422 PNXQXSPNTQGXXPGXSNTXXXXPXNXPGESP 327
           PN Q +PN     P  S+     P N   +SP
Sbjct: 141 PNVQSNPNNTAPFPSYSSNSLQLPTNQTADSP 172


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +3

Query: 30  SXPXPXXPPXXPSPXXXPXXXPXPPPPRPXGXRGXXPXP 146
           S P    PP  P P   P   P  PP  P G     P P
Sbjct: 413 STPPVPTPPSLP-PSAPPSLPPSAPPSLPMGAPAAPPLP 450



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
 Frame = +3

Query: 30  SXPXPXXPPXXPSPXXXPXXX-----PXPPPPRPXGXRGXXPXP 146
           S P P  PP   +    P        P PPPPR     G  P P
Sbjct: 335 SLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +2

Query: 23  PXXXPXPXXPPXXX-LPXXPPXXXPLXPAPPPXXXP 127
           P     P  PP    +P  PP   P  PAPPP   P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLP-PAAPAPPPAPAP 482



 Score = 23.0 bits (47), Expect(2) = 7.8
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 51  PPXXPSPXXXPXXXPXPPPPRP 116
           PP  P P       P   PPRP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRP 274



 Score = 21.4 bits (43), Expect(2) = 7.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 93  PXPPPPRPXGXRGXXP 140
           P PPPP     RG  P
Sbjct: 311 PPPPPPPSRRNRGKPP 326


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/48 (29%), Positives = 17/48 (35%)
 Frame = +2

Query: 17   PXPXXXPXPXXPPXXXLPXXPPXXXPLXPAPPPXXXPGXXPXTRPVKG 160
            P P     P   P   +P  P     + P PPP   P   P  +P  G
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP---PVPKPSVG 1206



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 13/47 (27%), Positives = 14/47 (29%)
 Frame = +1

Query: 7    PXXPPPXXXXPXXXPPXPXPPPXXXPXXXPXPRPPAXXGTGDXXPXP 147
            P    P    P   PP P P     P   P   PP    +    P P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230



 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = +2

Query: 23   PXXXPXPXXPPXXXLPXXPPXXXPLXPAPPPXXXPGXXPXTRP 151
            P   P    PP       PP   P   APP     G  P  +P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145



 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = +2

Query: 23   PXXXPXPXXPPXXXLPXXPPXXXPLXPAPPPXXXPGXXPXTRP 151
            P   P    PP       PP   P   APP     G  P  +P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,634
Number of Sequences: 5004
Number of extensions: 28872
Number of successful extensions: 257
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 585701508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)