Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C19
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.16 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.36 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    28   1.5  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 278 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 171
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 762 GGXPPPPPXXXXXXXGXPPP 821
           GG PPPPP       G PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 763 GAPXPPXPXXXXXXXGXPPPXXXP 834
           G P PP P       G PPP   P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 750 PXXXGGXPPPPPXXXXXXXGXPPP 821
           P    G PPPPP         PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 215 LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPIQYRSTRTLRMIKK 39
           L+S H L S  + T PR   N    +    K + P  ++   F+I + Y  TR L  I+ 
Sbjct: 291 LQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQN 350

Query: 38  S 36
           +
Sbjct: 351 N 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,265
Number of Sequences: 5004
Number of extensions: 48042
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)