Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C18
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   4.9  
04_03_0232 - 13049649-13052807                                         29   4.9  
04_04_0524 - 25916869-25916876,25917352-25917506,25917712-259178...    28   8.6  

>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -3

Query: 305 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 141
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 140 TPALAASMHIANTTR 96
            P   A+  +A TTR
Sbjct: 96  VPTTTAAARVAATTR 110


>04_03_0232 - 13049649-13052807
          Length = 1052

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -3

Query: 191 YSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILLGAFQIAFKSANQILRNSL 27
           +  SS+ W   +   STT    A++ +     SF +  A  +  KS++ ILR  +
Sbjct: 288 FGLSSKEWRHTNRWISTTHQYVATVKVPPQATSFFVTEAGSLIDKSSSMILRGDM 342


>04_04_0524 -
           25916869-25916876,25917352-25917506,25917712-25917841,
           25918013-25918094,25918180-25918213,25918271-25918327,
           25918686-25918791,25920755-25920881
          Length = 232

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 585 WWILKYTLVXSHQGNELPTDEFSMLV 508
           W+IL+Y L    + N LP D F+ LV
Sbjct: 51  WYILRYVLGFFQRYNLLPRDSFTFLV 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,452,703
Number of Sequences: 37544
Number of extensions: 419370
Number of successful extensions: 996
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)