Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_C17
(961 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.18
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.18
Identities = 22/69 (31%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Frame = +2
Query: 710 PXCPPXCPXIPXPRXFXLKXSXTPXPPXGKXPXSXPPXXPPXVPPS-PXXXP--XPLFXG 880
P PP P P L + P P S PP PP +PPS P P P
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Query: 881 XXPXAEFTP 907
P A P
Sbjct: 449 LPPSAPIAP 457
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 779 PXPPXGKXPXSXPPXXPPXVPPSPXXXPXPL 871
P PP G+ S PP PP PS P PL
Sbjct: 352 PLPPQGR---SAPPPPPPRSAPSTGRQPPPL 379
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +2
Query: 710 PXCPPXCPXIPXPRXFXLKXSXTPXPPXGKXPXSXP-PXXPPXVPPSPXXXPXP 868
P PP P P + P PP P + P P P PP P P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPP--SAPIAPPLPAGMPAAPPLPPAAPAP 476
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 719 PPXCPXIPXPRXFXLKXSXT-PXPPXGKXPXSXPPXXPPXVPPSP 850
PP P IP R S + P PP P + PP PP P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +2
Query: 710 PXCPPXCPXIPXPRXFXLKXSXTPXPPXGKXPXSXPPXXPPXVPPSPXXXPXP 868
P PP P + P L S PP + PP P P P P P
Sbjct: 433 PSAPPSLP-MGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Frame = +2
Query: 719 PPXCPXIPXPRXFXLKXSXTPXPPX--GKXPXSXPPXXPPXVPPSPXXXPXP 868
PP P P P+ + P P P S PP P PP P P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPI-PSKAPPIPSSLPPP 174
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Frame = +2
Query: 710 PXCPPXCPXI--PXPRXFXLKXSXTPXPPXGKXPXSXPPXXPPX---VPPSPXXXPXP 868
P PP P P P S P P P PP P VPP P P P
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +2
Query: 719 PPXCPXIPXPRXFXLKXSXTPXPPXGKXPXSXPPXXPPXVPPSP 850
PP +P P P P P + PP PP VPP P
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAP--SLPSAVPPM-PPKVPPPP 205
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/57 (28%), Positives = 19/57 (33%)
Frame = +2
Query: 719 PPXCPXIPXPRXFXLKXSXTPXPPXGKXPXSXPPXXPPXVPPSPXXXPXPLFXGXXP 889
P P +P P + P P P P PP PS P P+ G P
Sbjct: 1088 PSGIPPVPKPS---VAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +2
Query: 719 PPXCPXIPXPRXFXLKXSXTPXPPXGKXPXSXPPXXPPXVPPSPXXXPXP 868
P P +P P + P P G P P P VPP P P
Sbjct: 1155 PSGAPPVPKPS---VAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +2
Query: 731 PXIPXPRXFXLKXSXTPXPPXGKXPXSXPPXXPPXVPPSPXXXPXPLFXGXXP 889
P IP P T PP K P PP PS P G P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +2
Query: 731 PXIPXPRXFXLKXSXTPXPPXGKXPXSXPPXXPPXVPPSPXXXPXPL 871
P +P P + P P G P P PP PS P P+
Sbjct: 1189 PPVPPPS----EAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPV 1231
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 779 PXPPXGKXPXSXPPXXPP 832
P PP G P S PP PP
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.9
Identities = 17/62 (27%), Positives = 20/62 (32%)
Frame = +2
Query: 722 PXCPXIPXPRXFXLKXSXTPXPPXGKXPXSXPPXXPPXVPPSPXXXPXPLFXGXXPXAEF 901
P IP P + P PP + PP PP PP + P AE
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP--PPPAVSAGGSRYYAPAPQAEP 801
Query: 902 TP 907
P
Sbjct: 802 EP 803
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,616
Number of Sequences: 5004
Number of extensions: 24941
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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