Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C16
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    28   1.5  
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    27   3.6  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.2  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   8.2  

>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 271 ELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLAS 143
           ++LD+   +   I ++ S TRL+  GE+IS  DL I   Q  S
Sbjct: 87  DVLDVSGEFQRDIHHTVSKTRLSPSGEIISVDDLDIGNQQSIS 129


>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -3

Query: 373 KNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSG 221
           K FISV    F  L + N  HT + S     Y  E L   D+    I   G
Sbjct: 11  KTFISVRLNAFSCLAELNFRHTWYCSKKETPYQLERLQEEDIEETFICGKG 61


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 337 ILGDFNSHHTSWGSSVSNSYGYELLDILDMY 245
           +L  FN H  SW  + S +  Y++ ++L+ Y
Sbjct: 876 VLFQFNRHARSWIQNSSKAIPYQVKNLLESY 906


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 169 SICTP-QLASSLSWSTLCSTYNSDHYPIIISFPLGGK 62
           ++ TP QL S LS S++ S + +D Y  IIS    GK
Sbjct: 535 TVTTPLQLTSDLSISSVPSIHINDSYSCIISHTKYGK 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,990
Number of Sequences: 5004
Number of extensions: 55302
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)