Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C16
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    33   0.40 
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966     29   6.5  

>01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,
            6501915-6502156,6502229-6502457,6503020-6503184,
            6503279-6503605,6504150-6504191,6504333-6504400,
            6504748-6504934,6506249-6506311,6506748-6506790,
            6506919-6507019,6507110-6507184,6507359-6507445,
            6507593-6507682,6507906-6507992,6508585-6508783,
            6509113-6509177,6509502-6509606,6509726-6509871,
            6510100-6510224,6510335-6510437,6510482-6510596,
            6510734-6510869,6511298-6511387,6511484-6511578,
            6511698-6511763,6511868-6511936,6512034-6512147,
            6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
 Frame = -3

Query: 385  FNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYS--LCILNSGSPT 212
            F  I  F +V+ R    LG+F+      GSS+S     + ++I+   +    + ++GSPT
Sbjct: 1317 FQSISAFSAVIDR----LGEFDDLLDGNGSSLSKPDNIDGINIIFKSTGPTVLSSNGSPT 1372

Query: 211  RLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPIIISFPLG-GKSQQFKSL 41
            + + P  V+   +L++ TP+  + L           DH  +++  P G GK+   ++L
Sbjct: 1373 Q-SNPSMVLEICNLTLLTPRSGNILITDLTMELKEKDH--LLVMGPSGSGKTSLLRAL 1427


>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
          Length = 766

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 483 REGRKSAXVSDE*AYPXYPSALSSLKHXLPGDFE 584
           ++G+      DE A P YP ++    H LPG FE
Sbjct: 310 QDGQHGCTDIDECADPKYPCSVPGTCHNLPGGFE 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,119,648
Number of Sequences: 37544
Number of extensions: 345555
Number of successful extensions: 567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)