Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_C16
(888 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 77 2e-14
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 72 9e-13
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 54 3e-07
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 54 3e-07
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 51 2e-06
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 49 8e-06
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 44 2e-04
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 44 2e-04
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 44 3e-04
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 44 3e-04
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 44 4e-04
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 39 0.011
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 37 0.032
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 36 0.075
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 36 0.075
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 36 0.075
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 36 0.075
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 36 0.099
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 36 0.099
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 36 0.099
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 35 0.13
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 35 0.13
AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA... 29 8.6
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 77.4 bits (182), Expect = 2e-14
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = -3
Query: 403 IPPLQIFN--EIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCIL 230
IPP QIF+ +I + L ++LGD NS WGS +N+ G ++ ++ SL +L
Sbjct: 108 IPPSQIFSSSDISEILQNLNGSTILLGDLNSWSPLWGSPRTNTRGKKIETVILENSLIVL 167
Query: 229 NSGSPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPIII 83
N GSPT L+ + ID+S+ +PQ+A SWS + + SDH+PI I
Sbjct: 168 NDGSPTHLS-THNTFTHIDISLISPQIAHMCSWSISDNLHGSDHFPITI 215
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 72.1 bits (169), Expect = 9e-13
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Frame = -3
Query: 400 PPLQIFNE-IKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNS 224
P I N+ + N ++ P +I GDFN H WGS +N G +D L +LN
Sbjct: 106 PTKNITNQTLHNTFNIQQTPSLITGDFNGWHHPWGSPTTNKRGKITHRFIDNMHLILLND 165
Query: 223 GSPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPIIIS-FP 74
SPT + + IDL++C+P LA W L + SDH+PII + FP
Sbjct: 166 KSPTHFS-THNTYTHIDLTLCSPILAPHAKWKILNDLHGSDHFPIITTLFP 215
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 53.6 bits (123), Expect = 3e-07
Identities = 28/96 (29%), Positives = 47/96 (48%)
Frame = -3
Query: 364 ISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVI 185
IS + F+I GDFNS H +W + +N +G L ++ D+ IL PT +
Sbjct: 149 ISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPH-NHKA 207
Query: 184 SAIDLSICTPQLASSLSWSTLCSTYNSDHYPIIISF 77
A L +C + + L+ + +SDH P++I +
Sbjct: 208 KASTLDLCLTNIPNQLANPAVMQELSSDHLPVVIKY 243
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 53.6 bits (123), Expect = 3e-07
Identities = 28/96 (29%), Positives = 47/96 (48%)
Frame = -3
Query: 364 ISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVI 185
IS + F+I GDFNS H +W + +N +G L ++ D+ IL PT +
Sbjct: 97 ISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPH-NHKA 155
Query: 184 SAIDLSICTPQLASSLSWSTLCSTYNSDHYPIIISF 77
A L +C + + L+ + +SDH P++I +
Sbjct: 156 KASTLDLCLTNIPNQLANPAVMQELSSDHLPVVIKY 191
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 51.2 bits (117), Expect = 2e-06
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = -3
Query: 343 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLT-KPGEVISAIDLS 167
+++ GD+N+ H WG + ++ G EL + L + IL +GSPTR P S ID +
Sbjct: 133 YLVGGDWNARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFA 192
Query: 166 ICTPQLASSLSWSTLCSTYNSDHYPIIIS 80
+ + L+ T +SDH P+IIS
Sbjct: 193 V-YHGIPDHLATITQSWDLDSDHLPLIIS 220
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 49.2 bits (112), Expect = 8e-06
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = -3
Query: 349 RPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSG-SPTRLTKPGEVISAID 173
RP +I GD N+ T WGS +SN+ G ++D +++ L +LN G PT G S ID
Sbjct: 118 RPTVIGGDLNAWATEWGSRISNTRGRAVIDAMNLLDLVLLNDGFKPTFNNDRG--TSFID 175
Query: 172 LSICTPQLASSLSWSTLCSTYNSDH 98
++ + L + +W SDH
Sbjct: 176 VTFVSRVLVAGSNWMVHEDITLSDH 200
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 44.4 bits (100), Expect = 2e-04
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Frame = -3
Query: 403 IPPLQ--IFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCIL 230
+PP + I ++ K+ + L F+ GD+N+ H WG+ S G L +++ +L
Sbjct: 111 LPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVL 170
Query: 229 NSGSPTRLT-KPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPII 86
+G PT + P SA+D I L TL +SDH PI+
Sbjct: 171 ATGEPTFYSYNPLLTPSALDFFITCGYGMGRLDVQTL-QELSSDHLPIL 218
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 44.4 bits (100), Expect = 2e-04
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Frame = -3
Query: 382 NEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLT 203
+E K+ + F++ GD+N+ H WG+ SN G L +++ + L +G PTR
Sbjct: 119 DEFKDILEEFQTKFIVAGDWNASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYP 178
Query: 202 KPGEVISA-IDLSICTPQLASSLSWSTLCSTYNSDHYPIIISFPLGGKS 59
ID ++ L + S + +SDH P++I+ G S
Sbjct: 179 YGCRGSPGYIDFALTKGVLGIHANISAVVE-LSSDHLPLVITLDAGAIS 226
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 44.0 bits (99), Expect = 3e-04
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Frame = -3
Query: 382 NEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDM--YSLCILNSGSPTR 209
++ F + L F+ GD+N+ HT WGS + + G +L + L L ++ G PT
Sbjct: 118 DQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVSPKGKQLYNALTKPENKLDYVSPGKPTY 177
Query: 208 L-TKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPIIIS 80
P ++ ID +I T + ++ + + +SDH P+ ++
Sbjct: 178 WPADPRKIPDLIDFAI-TKHVPRNMVTAEALADLSSDHSPVFLN 220
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 44.0 bits (99), Expect = 3e-04
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = -3
Query: 370 NFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLD--ILDMYSLCILNSGSPTRLTKP 197
+F L F+ GD+N+ HT WGS + N G +L I L ++ GSPT
Sbjct: 123 DFFQALGPHFIAAGDYNAKHTHWGSRLVNPKGKQLYKTIIKATNKLDHVSPGSPTYWPSD 182
Query: 196 -GEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPIII 83
++ ID ++ T ++ SL + +SDH P++I
Sbjct: 183 LNKLPDLIDFAV-TKNISRSLVKAECLPDLSSDHSPVLI 220
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 43.6 bits (98), Expect = 4e-04
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Frame = -3
Query: 382 NEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDM--YSLCILNSGSPTR 209
++ F + L F+ GD+N+ HT WGS + G +L + L L ++ G PT
Sbjct: 118 DQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVTPKGKQLYNALTKPENKLDYVSPGKPTY 177
Query: 208 L-TKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPIIIS 80
P ++ ID +I T + ++ + + +SDH P+ ++
Sbjct: 178 WPADPRKIPDLIDFAI-TKHVPRNMVTAEALADLSSDHSPVFLN 220
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 38.7 bits (86), Expect = 0.011
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = -3
Query: 340 MILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLS 167
++ GD+N+ H WG + G L D + S+ I+ +GS T + SAID S
Sbjct: 161 ILCGDWNAKHRQWGCIRACQRGAALYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFS 220
Query: 166 ICTPQLASSLSWSTLCSTYNSDHYPIIISFPLGGKS 59
IC +L + + +SDH PI++ L K+
Sbjct: 221 IC-KRLGRYEKRISSSAHLSSDHLPILLEINLDIKT 255
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 37.1 bits (82), Expect = 0.032
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = -3
Query: 403 IPPLQ--IFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCIL 230
+PP + I ++ K+ + L F+ GD+N+ H WG+ S G L +++ +L
Sbjct: 111 LPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVL 170
Query: 229 NSGSPT 212
+G PT
Sbjct: 171 ATGEPT 176
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 35.9 bits (79), Expect = 0.075
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Frame = -3
Query: 343 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDL 170
F++ GD+N+ H WG + + G L + + + I+ +G T + SAID
Sbjct: 32 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 91
Query: 169 SIC--TPQLASSLSWSTLCSTYNSDHYPIIISFPL 71
SIC +L +S S + +SDH PI++ L
Sbjct: 92 SICKGLGRLEKRISSS---ADLSSDHLPILLEINL 123
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.9 bits (79), Expect = 0.075
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Frame = -3
Query: 343 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDL 170
F++ GD+N+ H WG + + G L + + + I+ +G T + SAID
Sbjct: 148 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 207
Query: 169 SIC--TPQLASSLSWSTLCSTYNSDHYPIIISFPL 71
SIC +L +S S + +SDH PI++ L
Sbjct: 208 SICKGLGRLEKRISSS---ADLSSDHLPILLEINL 239
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 35.9 bits (79), Expect = 0.075
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Frame = -3
Query: 343 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDL 170
F++ GD+N+ H WG + + G L + + + I+ +G T + SAID
Sbjct: 110 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 169
Query: 169 SIC--TPQLASSLSWSTLCSTYNSDHYPIIISFPL 71
SIC +L +S S + +SDH PI++ L
Sbjct: 170 SICKGLGRLEKRISSS---ADLSSDHLPILLEINL 201
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.9 bits (79), Expect = 0.075
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Frame = -3
Query: 343 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDL 170
F++ GD+N+ H WG + + G L + + + I+ +G T + SAID
Sbjct: 148 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 207
Query: 169 SIC--TPQLASSLSWSTLCSTYNSDHYPIIISFPL 71
SIC +L +S S + +SDH PI++ L
Sbjct: 208 SICKGLGRLEKRISSS---ADLSSDHLPILLEINL 239
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 35.5 bits (78), Expect = 0.099
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = -3
Query: 391 QIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 215
++FN + + + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 214 TRLT-KPGEVISAIDLSICTPQLASSL-SWSTLCSTYNSDHYPIII 83
T + SA+D +IC L ++ST +SDH PI I
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYST--DELSSDHLPIQI 239
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 35.5 bits (78), Expect = 0.099
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = -3
Query: 391 QIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 215
++FN + + + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 214 TRLT-KPGEVISAIDLSICTPQLASSL-SWSTLCSTYNSDHYPIII 83
T + SA+D +IC L ++ST +SDH PI I
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYST--DELSSDHLPIQI 239
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 35.5 bits (78), Expect = 0.099
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = -3
Query: 391 QIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 215
++FN + + + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 214 TRLT-KPGEVISAIDLSICTPQLASSL-SWSTLCSTYNSDHYPIII 83
T + SA+D +IC L ++ST +SDH PI I
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYST--DELSSDHLPIQI 239
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 35.1 bits (77), Expect = 0.13
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = -3
Query: 343 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDL 170
F++ GD+N+ H WG + + G L + + S I+ +G T + SAID
Sbjct: 148 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDF 207
Query: 169 SICTPQLASSLSWSTLCSTYNSDHYPIIISFPL 71
SIC L + + +SDH PI++ L
Sbjct: 208 SIC-KGLGRFEKRISSGADLSSDHLPILLEINL 239
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.1 bits (77), Expect = 0.13
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = -3
Query: 343 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDL 170
F++ GD+N+ H WG + + G L + + + I+ +G T + SAID
Sbjct: 148 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 207
Query: 169 SICTPQLASSLSWSTLCSTYNSDHYPIIISFPL 71
SIC L + + +SDH PI++ L
Sbjct: 208 SIC-KGLGRLEKRISSVADLSSDHLPILLEINL 239
>AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA
protein.
Length = 241
Score = 29.1 bits (62), Expect = 8.6
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 331 GDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVIS 182
GD+N+ H WG+ N G L +++ + L +G P R + + ++
Sbjct: 57 GDWNTSHWLWGAERCNRRGRALANLVLSTGMSSLVTGGPKRFQEAVDTLT 106
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,139,322
Number of Sequences: 53049
Number of extensions: 586196
Number of successful extensions: 973
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4332305172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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