Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C14
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   4.3  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   5.7  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    26   7.5  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   9.9  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 400  IWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYXLGDLLDVLKHGRLED-M 224
            +W   +       G+    Y+ + CLTT+   Y S L +  Y    ++    + +LED M
Sbjct: 1787 VWRVSIRDFAEVSGATDSFYMGIMCLTTALCKYHSALLND-YRKSVIMSAWNYIKLEDPM 1845

Query: 223  VKQ 215
            VKQ
Sbjct: 1846 VKQ 1848


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 406 SSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYXLGDL 260
           SS  +S ++T +     + I Y+S+NCL  + +  L   F + + +  L
Sbjct: 314 SSSRNSWIFTLLLTFTQLTIFYLSLNCLIENPYRMLRNTFPIWFIMQTL 362


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 620 SLYDEDD*SRQGPGPLEILRHHGLLTTNLVXI 715
           ++ DE+D +  GP PL++L  +G+  +++  I
Sbjct: 32  NVQDEEDEAAAGPMPLQMLEGNGITASDIKKI 63


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/70 (22%), Positives = 30/70 (42%)
 Frame = -1

Query: 659 RVLGGFSHLHHKGFTDDMAVNEEVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFS 480
           ++LGG SH+       D AV +E  + L      ET+   S++   + +        P +
Sbjct: 264 QILGGHSHIR------DFAVYDEASVSLEGGRYCETVGWLSIDGLSASNATRQYVGRPVT 317

Query: 479 HPARSPHENI 450
           +  R  + N+
Sbjct: 318 NETRQSYPNL 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,878
Number of Sequences: 5004
Number of extensions: 58639
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)