Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C09
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    40   3e-04
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    30   0.37 
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    28   1.5  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   2.6  
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    26   6.0  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    26   7.9  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    26   7.9  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +1

Query: 220 PDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGRKYGLA-GANDEEAFEIDQNVEFLH 390
           P +   +P G+ P++V DG  Y +S AI  +L RKYG +   ++E+  E+++   ++H
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMH 97


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 369 VDLEGLLVIGPGEPVLAAEVPADGGA 292
           VD++GL    PG+P+     PADG A
Sbjct: 719 VDIDGLTTFAPGKPLTLVVHPADGSA 744


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 370 QNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVY 480
           Q+V+FL + +  +  V YE ++ L AK   +   NVY
Sbjct: 65  QSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVY 101


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 249 TERSLWLEVRPVSGEHAVVFEVLASVGEQHTAALPESLASEVM 121
           T R L    R ++   +V  EV ASV EQ T +LP    S  M
Sbjct: 774 TSRELASSDRNINTGTSVASEVSASVSEQSTVSLPREKMSVFM 816


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 307 RYLGRKY-GLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVYP 483
           ++ GRK   +   + + A ++ +  E L         ++Y+  + L  + H +FS  V  
Sbjct: 146 KFFGRKVININQMHQDMAVDVPEGFELLGSTEDCEFQIFYKPRQALTFQGHPEFSTEVVN 205

Query: 484 DMLKKL 501
            M+K L
Sbjct: 206 TMVKVL 211


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 304 CRYLGRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEEL--KAKKHEDFSKNV 477
           C Y G KY + G ++   +E+      +  I     A  +  +E       ++++  + +
Sbjct: 112 CLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGKHYAEYDNLKQKL 171

Query: 478 YPDMLKKLNS 507
           Y D+L KL +
Sbjct: 172 YEDLLPKLKT 181


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 304 CRYLGRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEEL--KAKKHEDFSKNV 477
           C Y G KY + G ++   +E+      +  I     A  +  +E       ++++  + +
Sbjct: 112 CLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGKHYAEYDNLKQKL 171

Query: 478 YPDMLKKLNS 507
           Y D+L KL +
Sbjct: 172 YEDLLPKLKT 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,050
Number of Sequences: 5004
Number of extensions: 51314
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)