Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_C08
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 31 0.89
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 31 1.2
12_02_0299 - 17051570-17052474,17053542-17053755 31 1.5
08_01_0059 - 394001-394708 30 2.0
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 30 2.7
03_01_0515 - 3864796-3865425 30 2.7
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156 29 3.6
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.7
01_01_0070 - 542603-542686,542803-543441 29 4.7
01_01_0220 + 1866989-1868393,1868465-1869153 29 6.2
12_02_0072 + 13218669-13218706,13218715-13218781,13220400-132204... 28 8.3
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +2
Query: 596 HR-PPPPXTXXXKNPPPQLXXXXTPTGLXRFPRPFXPWKASPPCXSPXF 739
HR PPPP PPP TP P P P A PP +P F
Sbjct: 86 HRIPPPPPPLLPTPPPPPASISPTPAP----PLPPPPAPAPPPTPTPKF 130
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +2
Query: 593 FHRPPPPXTXXXKNPPPQLXXXXTPTGLXRFPRPFXPWKASPPCXSP 733
+ PPPP PPPQ P+ P P P PP +P
Sbjct: 109 YRPPPPPRKKPQFQPPPQPPRAWDPSPPPPPPAPAAPVLVPPPAPAP 155
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +2
Query: 584 LAFFHRPPPPXTXXXKNPPPQLXXXXTPTGLXRFPRPFXPWKASPPCXSP 733
+ F PPPP P P L P FP P PW +PP P
Sbjct: 229 IPFLTPPPPPFLPFPLPPIPFLTPPSPPP--PAFPFPLPPWPWAPPPAFP 276
>08_01_0059 - 394001-394708
Length = 235
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +2
Query: 599 RPPPPXTXXXKNPPPQLXXXXTPTGLXRFPRPFXPWKASPP 721
RPPPP T PPP P P P P + PP
Sbjct: 33 RPPPPPTPRPYAPPPPSHPLAPPPPHISPPAPVPPPPSPPP 73
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +2
Query: 599 RPPPPXTXXXKNPPPQLXXXXTPTGLXRFPRPFXPWKASPPCXSP 733
+PPPP PPP + P P P P K PP P
Sbjct: 192 QPPPPKEEEKPEPPPAVIIVEPPAPAPE-PEPEPPKKEPPPPPPP 235
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +2
Query: 602 PPPPXTXXXKNPPPQLXXXXTPTGLXRFPRPFXPWKASPPCXSP 733
PPPP + PPP L P P P P SP SP
Sbjct: 73 PPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSP 116
>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
Length = 598
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +2
Query: 605 PPPXTXXXKNPPPQLXXXXTPTGLXRFPRPFXPWKASPPCXS 730
PPP + PP PT + P P P PPC S
Sbjct: 255 PPPSPPHPRPQPPPPGSSDLPTDVAILPSPPHPRPPPPPCWS 296
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 602 PPPPXTXXXKNPPPQLXXXXTPTGLXRFPRPFXPWKASPPCXSP 733
PPPP PPP P + P P P K PP P
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPP 359
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +2
Query: 602 PPPPXTXXXKNPPPQLXXXXTPTGLXRFPRPFXPWKASPPCXSP 733
PPPP T PPP +P P P P PP +P
Sbjct: 91 PPPPVTPPPVTPPPVTPPPVSPP--PATPPPALPPSTPPPVAAP 132
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +2
Query: 605 PPPXTXXXKNPPPQLXXXXTPTGLXRFPRPFXPWKASPPCXSP 733
PPP T PPP TP + P P P A+PP P
Sbjct: 82 PPPPTPKKAPPPPVTPPPVTPPPVT--PPPVSPPPATPPPALP 122
>01_01_0220 + 1866989-1868393,1868465-1869153
Length = 697
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 675 SPVGVXXXXSWGGGFLXXXVQGGGGLWKNASNXAFLRVXGL-LLAFXSQGLSXVIP 511
+P G S GG + V G GL +A+ A R+ GL +L+ GL+ IP
Sbjct: 68 APCGTWRGVSCAGGRVTRLVLEGFGLSGDAALPALARLDGLRVLSLKGNGLTGAIP 123
>12_02_0072 +
13218669-13218706,13218715-13218781,13220400-13220471,
13222107-13222182,13222309-13222943
Length = 295
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 593 FHRPPPPXTXXXKNPPPQ 646
+HRPPPP PPPQ
Sbjct: 259 YHRPPPPPPAYPYVPPPQ 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,328,110
Number of Sequences: 37544
Number of extensions: 216787
Number of successful extensions: 862
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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