Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C08
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   1.4  
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    30   1.8  
AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical ...    28   7.4  
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    28   9.7  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    28   9.7  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 599 RPPPPXTXXXKNPPPQLXXXXTP--TGLXRFPRPFXPWKASPP 721
           RPPPP +     PPP      TP   G+   P P  P +  PP
Sbjct: 286 RPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 328


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 599 RPPPPXTXXXKNPPPQLXXXXTP--TGLXRFPRPFXPWKASPP 721
           RPPPP +     PPP      TP   G+   P P  P +  PP
Sbjct: 296 RPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 338


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 605 PPPXTXXXKNPPPQLXXXXTPTGLXRFPR 691
           PPP +     PPP      TPT L R PR
Sbjct: 170 PPPSSTPTPTPPPSSSSSPTPTPLRRSPR 198


>AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical
           protein W08E12.6 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/53 (32%), Positives = 18/53 (33%)
 Frame = +2

Query: 575 AXLLAFFHRPPPPXTXXXKNPPPQLXXXXTPTGLXRFPRPFXPWKASPPCXSP 733
           A L   F  PPPP      N PP +     P      P P       PPC  P
Sbjct: 13  ASLAQPFFLPPPPCFGIGCNQPPIVIAGPPPCFDCPPPAPIFVAPPPPPCFGP 65


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 20
            protein.
          Length = 1254

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 542  KASKRPXTRKKAXLLAF-FHRPPPPXTXXXKNPPPQ 646
            KA+++P T KKA        +PPPP     +N P Q
Sbjct: 1105 KATRKPRTTKKAAPATIGMPQPPPPSQIQQQNMPMQ 1140


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 602 PPPPXTXXXKNPPPQLXXXXTPTGLXRFPRP 694
           PPPP       PPP +    TP+   + P P
Sbjct: 88  PPPPPPTLKAPPPPPILGLKTPSKSLKTPTP 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,634,521
Number of Sequences: 27780
Number of extensions: 150499
Number of successful extensions: 355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)