Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C07
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    36   0.010
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   3.4  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   4.5  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.0  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   6.0  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +3

Query: 636  PASSLVRSPVPXPGXLPDTCPALSPLREAVAAFLIAHXCXYPPVPVLXS-LRSXPGPGVX 812
            P S+++ SP   P   P   P  +PL + V+    A     PPVP L S     P P   
Sbjct: 974  PVSNILSSPTSEP---PKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSAD 1030

Query: 813  QPPXXXPDRWXPYP 854
             PP   P    P P
Sbjct: 1031 APPIPVPSTAPPVP 1044



 Score = 32.3 bits (70), Expect = 0.091
 Identities = 24/76 (31%), Positives = 26/76 (34%)
 Frame = +3

Query: 627  PFPPASSLVRSPVPXPGXLPDTCPALSPLREAVAAFLIAHXCXYPPVPVLXSLRSXPGPG 806
            P  P  S+   PVP P       PA S         + A     PPVPV       P P 
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAA-----PPVPVPSGAPPVPKPS 1146

Query: 807  VXQPPXXXPDRWXPYP 854
            V  PP   P    P P
Sbjct: 1147 VAAPPVPAPSGAPPVP 1162



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
 Frame = +3

Query: 627  PFPPASSLVRSPVPXP-GXLPDTCPALS----PLREAVAAFLIAHXCXYPPVPVLXSLRS 791
            P  P  S+   PVP P G  P   P+++    P   +    +       PPVP       
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199

Query: 792  XPGPGVXQPPXXXPDRWXPYP 854
             P P V  PP   P    P P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVP 1220


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 554 LNEHHKNRRSSQRWRNPTGL*RYQAV 631
           L ++HKNR+S+     P GL  Y+AV
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAV 412


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 446 RIRGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQRWRNPT 607
           R+     E T  +  S   G+   PR  RF++G+   + +  N   +Q + N T
Sbjct: 511 RVTSRMSEHTGNRVVSFPRGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANAT 564


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 544 LRPPERASQKSTLKSEVAKPDRTIKIPGRFPLQAPSC 654
           LR P    Q +   +E   PD T  +PG F    P+C
Sbjct: 266 LRCPSTPVQTAAAPNESQIPDDTDFVPGTFDEDQPAC 302


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 657 SPVPXPGXLPDTCPALSPLREAVAAFL 737
           S +P P  LP T P L P    + AF+
Sbjct: 647 SHIPIPTVLPPTQPVLEPSYREIVAFI 673


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/58 (27%), Positives = 22/58 (37%)
 Frame = +3

Query: 597 ETRQDYKDTRPFPPASSLVRSPVPXPGXLPDTCPALSPLREAVAAFLIAHXCXYPPVP 770
           ++  +Y  + P P AS+    PVP P  +       S    A  A   A     PP P
Sbjct: 168 QSNANYTASSPLPTASANAPLPVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPPP 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,309
Number of Sequences: 5004
Number of extensions: 53838
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)