Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C06
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   4.8  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    26   6.4  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    26   6.4  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   8.4  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 213 DMPRGTAAMRLPFTTPRRSKEVVTEQPTP 127
           D+   TAA +L FT PRR++  + +   P
Sbjct: 58  DISTATAAEKLQFTVPRRARFEINDPRNP 86


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 423 DSTTAVNRSACSLNAHDXQEVPPVLAS*XFARRETSRPQ 539
           D   A   SAC++   D Q+VP V +S    + E   P+
Sbjct: 97  DDNVACGSSACNVLVTDEQDVPEVWSSKSLGKLEGFMPE 135


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 298 ARDGLRTIQACDSGFCADTLDVQLSKTWGYA 206
           A DGL  + +  SG C  TLD    + W  A
Sbjct: 568 AADGLVKVWSLSSGECVATLDNHEDRVWALA 598


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 390 SPYQSVTSRIXDSTTAVNRSACSLNAHDXQEVPP 491
           SP  S TS   +S     RSAC+LN  +  ++PP
Sbjct: 478 SPLPSPTSS--NSRLPRVRSACTLNVQELSKIPP 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,516,733
Number of Sequences: 5004
Number of extensions: 72352
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)