Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_C06
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0655 + 30668706-30668849,30669043-30669471 33 0.41
03_06_0613 - 35090377-35090478,35090686-35090839,35090925-350910... 31 1.3
02_03_0167 - 15923872-15925683 31 1.7
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911... 31 1.7
01_01_0820 - 6395150-6395769,6395865-6396294 31 1.7
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 29 3.8
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 29 5.1
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838... 29 6.7
04_03_0348 + 14735581-14737071 29 6.7
05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570 28 8.8
02_04_0277 - 21494616-21494747,21494830-21494916,21495025-214951... 28 8.8
>02_05_0655 + 30668706-30668849,30669043-30669471
Length = 190
Score = 32.7 bits (71), Expect = 0.41
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 287 PAYNSGMRLRILCRYPRRPALQNLGICQGGLRPCDCR 177
P SG+RL R+PRR +L C+GG PC R
Sbjct: 95 PLVRSGLRLLGSSRHPRRGSLNCPRHCRGGFSPCHRR 131
>03_06_0613 -
35090377-35090478,35090686-35090839,35090925-35091004,
35091191-35091340,35091920-35092045,35096500-35096916
Length = 342
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/82 (28%), Positives = 31/82 (37%)
Frame = -2
Query: 399 GTDSLEQPPRRALQVVSDVQLXKGTFNQPPGNAMHVMACVQFRHATPDFVQIPSTSSSPK 220
G+ S P A S + L PP A C + +SSS +
Sbjct: 38 GSSSASSSPAPAPAAASTLLLPPRLLAPPPAAAASHGGCDTGANILASTTTPSPSSSSHR 97
Query: 219 PGDMPRGTAAMRLPFTTPRRSK 154
R TA++ LPFT PRR +
Sbjct: 98 RSMSARFTASLVLPFTRPRRGR 119
>02_03_0167 - 15923872-15925683
Length = 603
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3
Query: 590 HXAVXGSYP*CLGHNAALWSAGLPSGKXS 504
H A GSY CL H A+L +AGL G S
Sbjct: 25 HAAASGSYSRCLRHYASLLAAGLGGGGAS 53
>01_06_1171 -
35089719-35090336,35090596-35090715,35090851-35091108,
35091934-35092563
Length = 541
Score = 30.7 bits (66), Expect = 1.7
Identities = 22/93 (23%), Positives = 38/93 (40%)
Frame = -2
Query: 375 PRRALQVVSDVQLXKGTFNQPPGNAMHVMACVQFRHATPDFVQIPSTSSSPKPGDMPRGT 196
P +A ++V+D+ L N+ P + A V+ + D +++P +P PR
Sbjct: 412 PTKAARIVADIILR--CLNKDPSERPTMRAVVESLASVQD-IKVPCRYPLQEPSAAPRKV 468
Query: 195 AAMRLPFTTPRRSKEVVTEQPTPKTRNNY*FKP 97
VVT P+P +RN + P
Sbjct: 469 MLKSTSLNGIIHHHPVVTFSPSPPSRNQHLLSP 501
>01_01_0820 - 6395150-6395769,6395865-6396294
Length = 349
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 318 QPPGNAMHVMACVQFRHATPD-FVQIPSTSSSPKPGDMPRGTAAMRLPFTTPRRSKEVVT 142
+PP + QF T D FV + + P P D PRG + LP R K VT
Sbjct: 76 RPPAGYNSALRVNQFADLTNDEFVSTHTGAKPPCPKDAPRGVDPIWLPCCIDWRYKGAVT 135
Query: 141 E 139
+
Sbjct: 136 D 136
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = -2
Query: 330 GTFNQPPGNAMHV-MACVQFRHATPDFVQIPSTSSSPKPGDMPRGTAAMRLPFTTP 166
GT PP +A A +P + +P P +PR T+A P TTP
Sbjct: 93 GTLTPPPSSAPSGGRATSSEARESPHATSVDDGGRAPPPPPLPRPTSARATPATTP 148
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 490 LCSPPEXLPDGRPADH-RAALCPRHYGYEPXTAXCPVP 600
L PP RPA+ R + P+H+GY P + P P
Sbjct: 445 LTPPPMPWGPPRPANMARHSSSPKHFGYAPNSGVLPAP 482
>10_08_0532 +
18580579-18580746,18581923-18581997,18582659-18583887,
18584853-18585013,18585272-18585279,18587737-18588768
Length = 890
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +2
Query: 287 AITCIALPGGWLKVPLXSCTSDTTCNALLGGCSKESVPECDVTN 418
A TC L GG+ KV S +D T A L S E +P D+TN
Sbjct: 774 ANTCYKLAGGYFKVGQVSKAADLTKKA-LASASNEWIP--DLTN 814
>04_03_0348 + 14735581-14737071
Length = 496
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 161 LRGVVNGNRMAAVPLGISPGFGEL--DVEGICTKSGVACL 274
L GVV G R AA+P G+ P + D+ +C + CL
Sbjct: 62 LDGVVPGFRFAAIPDGLPPSDPDATQDIPALCYSTMTTCL 101
>05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570
Length = 378
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 248 CTKSGVACLNCTQAITCI-ALPGGWLKVPLXSCTSDTTCNALLGGCSKESVPECDV 412
C C C + I L G L++PL S S ++ +A S P+CD+
Sbjct: 54 CADEAALCARCDRDIHAANRLAGKHLRLPLLSPASSSSSSAAALAPPPPSPPKCDI 109
>02_04_0277 -
21494616-21494747,21494830-21494916,21495025-21495157,
21495267-21495540,21495829-21495955,21496048-21496311
Length = 338
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 237 TSSSPKPGDMPRGTAAMRLPFTTPRRSKEVVTEQPTPKTRNNY 109
T P MP+G ++ + + TPR S++ V + PK N+Y
Sbjct: 247 TGRKPVDHTMPKGQQSL-VTWATPRLSEDKVKQCVDPKLNNDY 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,930,944
Number of Sequences: 37544
Number of extensions: 606039
Number of successful extensions: 1434
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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