Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C05
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0134 - 1224084-1224269,1224578-1224662,1224763-1225050,122...    29   6.7  
01_06_0660 + 30969879-30970218,30970346-30970514,30971373-309716...    28   8.9  

>01_01_0134 -
           1224084-1224269,1224578-1224662,1224763-1225050,
           1225114-1225334,1225511-1225642,1226218-1226494,
           1226722-1226770,1226993-1227088,1227779-1227911,
           1228241-1228391,1228484-1228674,1229167-1229382
          Length = 674

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 511 GXTWXPKIFKRSTTKHKNGLYR 446
           G  + PK+ ++STTKH+ G +R
Sbjct: 338 GSEFSPKLIQKSTTKHRRGWWR 359


>01_06_0660 +
           30969879-30970218,30970346-30970514,30971373-30971635,
           30971717-30971864,30972019-30972082,30972225-30972248
          Length = 335

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +2

Query: 644 CPSLRPPSXXLXAPCRNLPQVXGREILSGPPXIWP 748
           CP   PP      P RN PQ  GR   + P   WP
Sbjct: 147 CPPPPPPHGAPATPARNRPQTQGRG-AAAPVVGWP 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,324,478
Number of Sequences: 37544
Number of extensions: 299360
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)