Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C05
         (910 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74036-2|CAA98487.1|  266|Caenorhabditis elegans Hypothetical pr...    29   6.1  
Z74036-1|CAA98486.1|  299|Caenorhabditis elegans Hypothetical pr...    29   6.1  
U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter...    28   8.0  
U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter...    28   8.0  
L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.     28   8.0  

>Z74036-2|CAA98487.1|  266|Caenorhabditis elegans Hypothetical
           protein F55C10.3 protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 636 PSRPSGKFRGQGTXGICXERXQPGAPG 556
           P  PSG   G G  G   +  QPGAPG
Sbjct: 125 PPGPSGDAGGNGNPGSPGQDGQPGAPG 151


>Z74036-1|CAA98486.1|  299|Caenorhabditis elegans Hypothetical
           protein F55C10.2 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 636 PSRPSGKFRGQGTXGICXERXQPGAPG 556
           P  PSG   G G  G   +  QPGAPG
Sbjct: 158 PPGPSGDAGGNGNPGSPGQDGQPGAPG 184


>U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform a protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/78 (25%), Positives = 26/78 (33%)
 Frame = -2

Query: 780 KLXXEDSRHTRGQIXGGPERISRPSTWGKFRQGAXXXXXXXXXXGQTXPSRPSGKFRGQG 601
           K+    +R  RG    G     RP+ +G    GA              P  P G     G
Sbjct: 61  KMRMTGNRTARGAYGSGASHGFRPTAYGDEITGAPLETECPGCCIPGPPG-PRGSSGTPG 119

Query: 600 TXGICXERXQPGAPGXXP 547
             G+     +PG PG  P
Sbjct: 120 KPGLPGNAGKPGMPGTTP 137


>U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform b protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/78 (25%), Positives = 26/78 (33%)
 Frame = -2

Query: 780 KLXXEDSRHTRGQIXGGPERISRPSTWGKFRQGAXXXXXXXXXXGQTXPSRPSGKFRGQG 601
           K+    +R  RG    G     RP+ +G    GA              P  P G     G
Sbjct: 98  KMRMTGNRTARGAYGSGASHGFRPTAYGDEITGAPLETECPGCCIPGPPG-PRGSSGTPG 156

Query: 600 TXGICXERXQPGAPGXXP 547
             G+     +PG PG  P
Sbjct: 157 KPGLPGNAGKPGMPGTTP 174


>L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/78 (25%), Positives = 26/78 (33%)
 Frame = -2

Query: 780 KLXXEDSRHTRGQIXGGPERISRPSTWGKFRQGAXXXXXXXXXXGQTXPSRPSGKFRGQG 601
           K+    +R  RG    G     RP+ +G    GA              P  P G     G
Sbjct: 82  KMRMTGNRTARGAYGSGASHGFRPTAYGDEITGAPLETECPGCCIPGPPG-PRGSSGTPG 140

Query: 600 TXGICXERXQPGAPGXXP 547
             G+     +PG PG  P
Sbjct: 141 KPGLPGNAGKPGMPGTTP 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,160,672
Number of Sequences: 27780
Number of extensions: 239337
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)