Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C03
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428...   155   4e-38
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321...    34   0.12 
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779     30   2.0  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    29   6.2  

>01_06_1797 +
           39941482-39941608,39942302-39942497,39942601-39942828,
           39943157-39943388,39943476-39943583,39943696-39943968,
           39944261-39944545
          Length = 482

 Score =  155 bits (376), Expect = 4e-38
 Identities = 76/141 (53%), Positives = 87/141 (61%), Gaps = 3/141 (2%)
 Frame = +2

Query: 131 GYASPLDAFNNGPREELLYVVCVRPNK--NKQDYLATVDVDSKSATYGQVXHRTYTGVTG 304
           GYA+PL+A   GPRE+LLYV CV      NK DYL TVDVD  S TY QV HR      G
Sbjct: 18  GYATPLEAMEKGPREKLLYVTCVYNGTGINKPDYLGTVDVDPNSPTYSQVIHRLPVTHVG 77

Query: 305 DELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAVDVGTDPXKPRLHXVLDGSXMT- 481
           DELHHSGWN CSSCH + +  R  LI+P L S  VY VD   DP  P LH V++   +  
Sbjct: 78  DELHHSGWNACSSCHGDPSASRRFLILPSLLSGRVYVVDTLKDPRAPALHKVVEAEDIAE 137

Query: 482 SFXCSFPHXTHCLXTGEIMIS 544
                FPH +HCL +GEIMIS
Sbjct: 138 KTGLGFPHTSHCLASGEIMIS 158


>04_04_1028 +
           30230224-30231274,30231500-30231609,30232144-30232170,
           30233107-30234252
          Length = 777

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 278 HRTYTGVTGDELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAV 418
           +  +T      LHH GW+   SC  N  +  D L  PG   C+ Y +
Sbjct: 165 YSNFTATFTSSLHHHGWSTNGSCTTNGRVNSDGL-CPGTACCDAYGM 210


>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
          Length = 704

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 167 PREELLYVV-CVRPNKNKQDYLATVDVDSKSA 259
           P E L  ++ C +PN+N   +LATVD+D + A
Sbjct: 272 PPEALAGLIKCEKPNRNIYGFLATVDLDGRRA 303


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 362 VPRCHGNSNTHSSRCDAVRLLLLPCRCGEXPGRM 261
           V RC G+    SS   AV    L CRCG   GR+
Sbjct: 121 VCRCSGHGAGRSSDLGAVYRRRLECRCGGGGGRL 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,641,488
Number of Sequences: 37544
Number of extensions: 361496
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)