Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C03
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023835-5|CAA19490.1|  471|Caenorhabditis elegans Hypothetical ...   121   7e-28
Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical pr...    33   0.34 
AL021489-2|CAA16370.1|  333|Caenorhabditis elegans Hypothetical ...    28   7.3  

>AL023835-5|CAA19490.1|  471|Caenorhabditis elegans Hypothetical
           protein Y37A1B.5 protein.
          Length = 471

 Score =  121 bits (291), Expect = 7e-28
 Identities = 74/200 (37%), Positives = 97/200 (48%), Gaps = 1/200 (0%)
 Frame = +2

Query: 131 GYASPLDAFNNGPREELLYVVCVRPNK-NKQDYLATVDVDSKSATYGQVXHRTYTGVTGD 307
           GYASP DA   GPREE+L+V    PN  +  D + TVDV+ +S T+ QV  R      GD
Sbjct: 14  GYASPADAIK-GPREEVLFVTA--PNAADGPDAIFTVDVNPESDTFCQVISRVDVPHIGD 70

Query: 308 ELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAVDVGTDPXKPRLHXVLDGSXMTSF 487
           E+HH+GWN CSSCHD    KR  LI+P L+S  +Y ++V  +  K  L   ++ S + S 
Sbjct: 71  EVHHTGWNACSSCHDKPTEKRSHLIVPCLNSDRIYIINVENE-RKIYLEHTIEPSKLHSL 129

Query: 488 XCSFPHXTHCLXTGEIMISRWEMXNENRKXGXLCSSTXXLWXVTXTWTKGENXAKXAXXF 667
             SFPH +HCL  G IMIS     N     G         +    TW   E        F
Sbjct: 130 NLSFPHTSHCLADGNIMISTLGEAN-GTPSGNFLLLDGKTFEPKGTWPADEKTVPFNYDF 188

Query: 668 GITHTXMX*XPSXWGPPKYL 727
                      + WG P ++
Sbjct: 189 WYQPRRNVMISTEWGSPNHI 208



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/70 (25%), Positives = 26/70 (37%)
 Frame = +1

Query: 544 TMGDXKRKPEXGXFVLIDSXTLGSDXNVD*GGKSC*XCLXXWYHPYXDVXIXLXMGSPXI 723
           T+G+    P  G F+L+D  T           K+       WY P  +V I    GSP  
Sbjct: 149 TLGEANGTPS-GNFLLLDGKTFEPKGTWPADEKTVPFNYDFWYQPRRNVMISTEWGSPNH 207

Query: 724 FXSXFTXXYI 753
               F   ++
Sbjct: 208 IKKGFNPAHV 217


>Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical
           protein R11G10.2 protein.
          Length = 576

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +2

Query: 173 EELLYVVCVRPNKN-KQDYLATVDVDSKSATYGQVXHRTYTGVTGDELHHSGW-NVCSSC 346
           +EL  +VC   +   ++D +A VD+D  S T+  +    +    GDE     W     S 
Sbjct: 89  DELFAIVCCPHSIGYERDKIALVDLDPTSETFCTILSEVHLTSNGDEPGRMNWAKSAESL 148

Query: 347 HDNAALKRDLLIMPGLHSCNVYAV 418
            +     R  +I+P ++S  +Y +
Sbjct: 149 GEMNKFVRRNIIVPCMNSGKIYVI 172


>AL021489-2|CAA16370.1|  333|Caenorhabditis elegans Hypothetical
           protein Y44A6C.2 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 256 GFRINVHCXKIVLFVFVWPNADHVKK 179
           G R++V   +++L VFVWPN    +K
Sbjct: 294 GTRVSVRFDELILQVFVWPNEKPSRK 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,751,376
Number of Sequences: 27780
Number of extensions: 286578
Number of successful extensions: 505
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)