Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_C01
         (926 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
 Frame = +2

Query: 383 GGXGXXPXXXRXPPPPPXPPPXXPA--PPXXXPPAXP 487
           G  G  P   + P  P    P  P+  PP   PP  P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +2

Query: 413 RXPPPPPXPPPXXPAPPXXXPPAXPA 490
           R  PP P   P    PP   P   P+
Sbjct: 36  RGSPPNPSQGPPPGGPPGAPPSQNPS 61


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -3

Query: 492 GAGXAGGXXXGGAGXX---GGGXGGGGG 418
           G+  AGG   G +G     G   GGGGG
Sbjct: 23  GSSSAGGVVTGASGGSIVVGANNGGGGG 50



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 486 GXAGGXXXGGAGXXGGGXGGG 424
           G +GG    GA   GGG G G
Sbjct: 33  GASGGSIVVGANNGGGGGGLG 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 419  PPPPPXPP 442
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 422  PPPPXPPP 445
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 422 PPPPXPPPXXPA 457
           PP P PPP  P+
Sbjct: 338 PPKPAPPPPPPS 349



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 422 PPPPXPPPXXPAP 460
           P PP PPP    P
Sbjct: 341 PAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,067
Number of Sequences: 438
Number of extensions: 2246
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)