Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_B24
(934 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 38 0.014
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 38 0.014
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 38 0.014
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.39
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 0.89
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.89
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.89
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.89
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81507-4|CAL49434.1| 598|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.2
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.2
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 1.2
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.2
DQ523832-1|ABF71877.1| 598|Caenorhabditis elegans P21-activated... 31 1.2
AL032639-12|CAL49443.1| 598|Caenorhabditis elegans Hypothetical... 31 1.2
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 30 2.1
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 30 2.1
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 30 2.7
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 30 2.7
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 30 2.7
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 3.6
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 29 4.8
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 29 4.8
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.8
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 29 4.8
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 6.3
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 6.3
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 29 6.3
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 29 6.3
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 6.3
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 6.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 6.3
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 6.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.3
AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical... 28 8.3
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 37.5 bits (83), Expect = 0.014
Identities = 25/70 (35%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPP-----PXXKXLKXKXKXKGXGXPPQXNPXG-PPXNPPXPHXNL 740
P GG PPP G PP P G PP P G PP PP P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780
Query: 741 RGYX*GPGPP 770
+G GP PP
Sbjct: 781 KG---GPPPP 787
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = +2
Query: 716 PPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVP---NXXXXPPPPP 850
PP PP P + GP P GC P P P PPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPG---GCPPPPPPPPPGGFKGGPPPPP 788
Score = 31.5 bits (68), Expect = 0.89
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = +2
Query: 716 PPXPPXXPPRLXLGPXTPXXXTNRXX--GCXXPQPVPNXXXXPPPPP 850
PP PP P + GP P G P P P PPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 37.5 bits (83), Expect = 0.014
Identities = 25/70 (35%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPP-----PXXKXLKXKXKXKGXGXPPQXNPXG-PPXNPPXPHXNL 740
P GG PPP G PP P G PP P G PP PP P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780
Query: 741 RGYX*GPGPP 770
+G GP PP
Sbjct: 781 KG---GPPPP 787
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = +2
Query: 716 PPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVP---NXXXXPPPPP 850
PP PP P + GP P GC P P P PPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPG---GCPPPPPPPPPGGFKGGPPPPP 788
Score = 31.5 bits (68), Expect = 0.89
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = +2
Query: 716 PPXPPXXPPRLXLGPXTPXXXTNRXX--GCXXPQPVPNXXXXPPPPP 850
PP PP P + GP P G P P P PPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 37.5 bits (83), Expect = 0.014
Identities = 25/70 (35%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPP-----PXXKXLKXKXKXKGXGXPPQXNPXG-PPXNPPXPHXNL 740
P GG PPP G PP P G PP P G PP PP P
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 363
Query: 741 RGYX*GPGPP 770
+G GP PP
Sbjct: 364 KG---GPPPP 370
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = +2
Query: 716 PPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVP---NXXXXPPPPP 850
PP PP P + GP P GC P P P PPPPP
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPG---GCPPPPPPPPPGGFKGGPPPPP 371
Score = 31.5 bits (68), Expect = 0.89
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = +2
Query: 716 PPXPPXXPPRLXLGPXTPXXXTNRXX--GCXXPQPVPNXXXXPPPPP 850
PP PP P + GP P G P P P PPPPP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 32.7 bits (71), Expect = 0.39
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Frame = +2
Query: 707 PXKPPXPPXX-PPRLXLGPXT--PXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
P PP PP PP L P P C P P P PPPPP
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPP 79
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.5 bits (68), Expect = 0.89
Identities = 23/89 (25%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Frame = +3
Query: 591 GXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXN--PXGPPXNPPXPHXNLRGYX*GPG 764
G P PPP G G PP P G N P P +G+ G
Sbjct: 697 GVPPMFNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAP 756
Query: 765 PPXXXXIAXXXAXXPSXCQXXLXXPPXPP 851
PP A + P + + P PP
Sbjct: 757 PPPFGRGAGPMSSFPPPPRGGMHHMPPPP 785
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.89
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNPXGPPXNPP 722
P GG PP PPP + + + G PP +P P PP
Sbjct: 315 PQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP--PTGRPP 360
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQ-XNPXGPPXNPPXP 728
P G PPP G PP G PP+ +P PP P P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP 282
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +2
Query: 704 APXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
+P PP P PP G P P P PPPPP
Sbjct: 236 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 553 GXXPXSXLPPGGAGXXXPPKXXGXPPP 633
G P LPP AG PP G PPP
Sbjct: 305 GSPPTGSLPPPQAGGSPPPAGTGSPPP 331
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXN--PXGPPXNPPXPHXNLRGYX 752
P PPP G PPP G PP+ P PP P +L
Sbjct: 257 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQ 316
Query: 753 *GPGPP 770
G PP
Sbjct: 317 AGGSPP 322
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = +3
Query: 585 GGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNPXGPP--XNPPXP 728
G G PPP G PPP + PP +P PP +PP P
Sbjct: 251 GSGSPPPPPAAGSPPPP--------RTGSPPPPPTGSPPPPPAGGSPPPP 292
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/49 (28%), Positives = 16/49 (32%)
Frame = +2
Query: 704 APXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
+P PP PP P P + P P PPPPP
Sbjct: 254 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.89
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNPXGPPXNPP 722
P GG PP PPP + + + G PP +P P PP
Sbjct: 336 PQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP--PTGRPP 381
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQ-XNPXGPPXNPPXP 728
P G PPP G PP G PP+ +P PP P P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP 303
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +2
Query: 704 APXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
+P PP P PP G P P P PPPPP
Sbjct: 257 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 553 GXXPXSXLPPGGAGXXXPPKXXGXPPP 633
G P LPP AG PP G PPP
Sbjct: 326 GSPPTGSLPPPQAGGSPPPAGTGSPPP 352
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXN--PXGPPXNPPXPHXNLRGYX 752
P PPP G PPP G PP+ P PP P +L
Sbjct: 278 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQ 337
Query: 753 *GPGPP 770
G PP
Sbjct: 338 AGGSPP 343
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = +3
Query: 585 GGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNPXGPP--XNPPXP 728
G G PPP G PPP + PP +P PP +PP P
Sbjct: 272 GSGSPPPPPAAGSPPPP--------RTGSPPPPPTGSPPPPPAGGSPPPP 313
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/49 (28%), Positives = 16/49 (32%)
Frame = +2
Query: 704 APXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
+P PP PP P P + P P PPPPP
Sbjct: 275 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.89
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNPXGPPXNPP 722
P GG PP PPP + + + G PP +P P PP
Sbjct: 321 PQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP--PTGRPP 366
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQ-XNPXGPPXNPPXP 728
P G PPP G PP G PP+ +P PP P P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP 288
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +2
Query: 704 APXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
+P PP P PP G P P P PPPPP
Sbjct: 242 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 553 GXXPXSXLPPGGAGXXXPPKXXGXPPP 633
G P LPP AG PP G PPP
Sbjct: 311 GSPPTGSLPPPQAGGSPPPAGTGSPPP 337
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXN--PXGPPXNPPXPHXNLRGYX 752
P PPP G PPP G PP+ P PP P +L
Sbjct: 263 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQ 322
Query: 753 *GPGPP 770
G PP
Sbjct: 323 AGGSPP 328
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = +3
Query: 585 GGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNPXGPP--XNPPXP 728
G G PPP G PPP + PP +P PP +PP P
Sbjct: 257 GSGSPPPPPAAGSPPPP--------RTGSPPPPPTGSPPPPPAGGSPPPP 298
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/49 (28%), Positives = 16/49 (32%)
Frame = +2
Query: 704 APXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
+P PP PP P P + P P PPPPP
Sbjct: 260 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/49 (38%), Positives = 20/49 (40%)
Frame = +2
Query: 704 APXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
AP PP PP P GP +P C P P P PPPPP
Sbjct: 87 APLPPPPPPASP---CCGP-SPVPAP-----CCPPPPAPAAPCCPPPPP 126
>Z81507-4|CAL49434.1| 598|Caenorhabditis elegans Hypothetical
protein Y38F1A.10a protein.
Length = 598
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +2
Query: 716 PPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPP 847
PP PP P R TN P PVP P PP
Sbjct: 217 PPQPPVLPQRSKTASAVATTTTNPTTSNGAPPPVPGSKGPPVPP 260
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/65 (29%), Positives = 22/65 (33%)
Frame = +3
Query: 666 KGXGXPPQXNPXGPPXNPPXPHXNLRGYX*GPGPPXXXXIAXXXAXXPSXCQXXLXXPPX 845
+G P P G P P P G PG P +A P C+ PP
Sbjct: 99 EGCCLPGPPGPAGAPGKPGKP--GRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPG 156
Query: 846 PPFXP 860
PP P
Sbjct: 157 PPGPP 161
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/65 (29%), Positives = 22/65 (33%)
Frame = +3
Query: 666 KGXGXPPQXNPXGPPXNPPXPHXNLRGYX*GPGPPXXXXIAXXXAXXPSXCQXXLXXPPX 845
+G P P G P P P G PG P +A P C+ PP
Sbjct: 94 EGCCLPGPPGPAGAPGKPGKP--GRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPG 151
Query: 846 PPFXP 860
PP P
Sbjct: 152 PPGPP 156
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/56 (37%), Positives = 21/56 (37%)
Frame = -2
Query: 849 GGGGGXIXXFGTGWGXXXPFXRXVX*XGVXGPNXNLGGXXGGXGGXLGAXMGXXGG 682
GGG G G GWG G G N GG GG GG G G GG
Sbjct: 59 GGGSGWGGGRGGGWGNNGGGGN----WGGNGGGGNGGGGRGGGGGGGGGRGGGGGG 110
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/65 (29%), Positives = 22/65 (33%)
Frame = +3
Query: 666 KGXGXPPQXNPXGPPXNPPXPHXNLRGYX*GPGPPXXXXIAXXXAXXPSXCQXXLXXPPX 845
+G P P G P P P G PG P +A P C+ PP
Sbjct: 94 EGCCLPGPPGPAGAPGKPGKP--GRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPG 151
Query: 846 PPFXP 860
PP P
Sbjct: 152 PPGPP 156
>DQ523832-1|ABF71877.1| 598|Caenorhabditis elegans P21-activated
kinase MAX-2 protein.
Length = 598
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +2
Query: 716 PPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPP 847
PP PP P R TN P PVP P PP
Sbjct: 217 PPQPPVLPQRSKTASAVATTTTNPTTSNGAPPPVPGSKGPPVPP 260
>AL032639-12|CAL49443.1| 598|Caenorhabditis elegans Hypothetical
protein Y38F1A.10a protein.
Length = 598
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +2
Query: 716 PPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPP 847
PP PP P R TN P PVP P PP
Sbjct: 217 PPQPPVLPQRSKTASAVATTTTNPTTSNGAPPPVPGSKGPPVPP 260
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 704 APXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
AP +PP PP + P P + P+ P+ PPPPP
Sbjct: 570 APARPPPPPPSSGTRGIAPSRPLP---QAPNYGTPENRPHAVPPPPPPP 615
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 704 APXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
AP +PP PP + P P + P+ P+ PPPPP
Sbjct: 396 APARPPPPPPSSGTRGIAPSRPLP---QAPNYGTPENRPHAVPPPPPPP 441
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +2
Query: 707 PXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
P PP PP P + TP ++ P+ + PPPPP
Sbjct: 767 PPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPP 814
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +2
Query: 707 PXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
P PP PP P + TP ++ P+ + PPPPP
Sbjct: 767 PPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPP 814
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXK---GXGXPPQXNPXGPPXNPPXPHXNLRGY 749
P GG P G PPP + + + G PP G P PP G+
Sbjct: 118 PHGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGH 177
Query: 750 X*GPGPP 770
GPP
Sbjct: 178 GGMGGPP 184
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXK---GXGXPPQXNPXGPPXNPPXPHXNLRGY 749
P GG P G PPP + + + G PP G P PP G+
Sbjct: 398 PHGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGH 457
Query: 750 X*GPGPP 770
GPP
Sbjct: 458 GGMGGPP 464
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/48 (31%), Positives = 17/48 (35%)
Frame = +2
Query: 707 PXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
P PP PP PP P P + P+P PPP P
Sbjct: 132 PPPPPPPPHYPPPPPHYPPPPPAPHSAYIDHSAPRPAYIEHSAPPPQP 179
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Frame = +2
Query: 704 APXKPPXPPXXPPR-----LXLGPXTPXXXTNRXXGCXXPQPVPNXXXXP 838
A + P PP PPR + P TP T R P+P P P
Sbjct: 328 ATTRAPLPPSPPPRTSKRPVTQAPTTPRATTTRRPTTTTPRPTPRRTRRP 377
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Frame = +2
Query: 704 APXKPPXPPXX---PPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
A +PP PP PP G P + P P P PPPPP
Sbjct: 29 ASRRPPPPPKGTGTPPPPPTGE--PQDLSGEGNASRRPPPPPKGTGTPPPPP 78
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Frame = +2
Query: 704 APXKPPXPPXX---PPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
A +PP PP PP G P + P P P PPPPP
Sbjct: 92 ASRRPPPPPKGTGTPPPPPTGE--PQDLSGEGNASRRPPPPPKGTGSPPPPP 141
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Frame = +2
Query: 704 APXKPPXPPXX---PPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
A +PP PP PP G P + P P P PPPPP
Sbjct: 123 ASRRPPPPPKGTGSPPPPPTGE--PQDLSGEGNASRRPPPPPKGTGSPPPPP 172
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Frame = +2
Query: 704 APXKPPXPPXX---PPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
A +PP PP PP G P + P P P PPPPP
Sbjct: 154 ASRRPPPPPKGTGSPPPPPTGE--PQDLSTEGNASRRPPPPPKGTGTPPPPP 203
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Frame = +2
Query: 704 APXKPPXPPXXPP----RLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPPF 853
+P PP PP PP + P P T P PVP PPPP F
Sbjct: 1335 SPSPPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVP-----PPPPLF 1383
Score = 28.7 bits (61), Expect = 6.3
Identities = 25/102 (24%), Positives = 29/102 (28%), Gaps = 11/102 (10%)
Frame = +3
Query: 600 PPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNPX----------GPPXNP-PXPHXNLRG 746
PP G P P + + G P P GPP P PH + G
Sbjct: 1509 PPGPGRGMPSPMMRGSSMRGGFPQRGGGPGMGPSQYYHDSPQNRGPPMGGLPPPHGGMNG 1568
Query: 747 YX*GPGPPXXXXIAXXXAXXPSXCQXXLXXPPXPPFXPXXXP 872
+ GP PP L PP P P P
Sbjct: 1569 WRGGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGP 1610
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +2
Query: 707 PXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
P PP PP G P R PQ +P PPPPP
Sbjct: 172 PNGQAPPPVYPP---FGQPAPQMSGQRMPYPYPPQGMPGYPGGPPPPP 216
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = +3
Query: 669 GXGXPPQXNPXGPPXNPPXPHXNLRGYX*GPGPPXXXXIAXXXAXXPSXCQXXLXXPPXP 848
G P P G P P P G PG A A P CQ PP P
Sbjct: 105 GCCNPGPPGPGGSPGKPGKP--GKPGAPGAPGAAGKGASAPCEAKTPPPCQPCPAGPPGP 162
Query: 849 P 851
P
Sbjct: 163 P 163
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 806 PQPVPNXXXXPPPPP 850
P PVPN PPPPP
Sbjct: 258 PTPVPNPVPSPPPPP 272
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = +2
Query: 716 PPXPPXXPPRLXLGPX---TPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
PP PP P +L P TP T P P P PPPPP
Sbjct: 324 PPPPP--PMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPP 369
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/64 (29%), Positives = 23/64 (35%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNPXGPPXNPPXPHXNLRGYX*G 758
P PPP G PPP + + + PPQ P P + RGY
Sbjct: 96 PPRNNCLPPP---GPPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLPSPRGYENQ 152
Query: 759 PGPP 770
P PP
Sbjct: 153 PQPP 156
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/64 (29%), Positives = 23/64 (35%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNPXGPPXNPPXPHXNLRGYX*G 758
P PPP G PPP + + + PPQ P P + RGY
Sbjct: 96 PPRNNCLPPP---GPPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLPSPRGYENQ 152
Query: 759 PGPP 770
P PP
Sbjct: 153 PQPP 156
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/64 (29%), Positives = 23/64 (35%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNPXGPPXNPPXPHXNLRGYX*G 758
P PPP G PPP + + + PPQ P P + RGY
Sbjct: 96 PPRNNCLPPP---GPPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLPSPRGYENQ 152
Query: 759 PGPP 770
P PP
Sbjct: 153 PQPP 156
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/71 (30%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Frame = +3
Query: 567 FXXXPXGGGXXPPPXXXG---XPPPXXKXLKXKXKXKGXGXPPQXNPXGPPXNPPXPHXN 737
F P G PPP G PPP G PP G P PP P
Sbjct: 64 FIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP--- 120
Query: 738 LRGYX*GPGPP 770
G P PP
Sbjct: 121 -SGLGVAPQPP 130
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 579 PXGGGXXPPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNPXGPPXNP 719
P GG PPP G PPP G G PQ P NP
Sbjct: 99 PMMGGIPPPPPMFGAPPP-------PPPPSGLGVAPQPPRPKTPVNP 138
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = +3
Query: 666 KGXGXPPQXNPXGPPXNPPXPHXNLRGYX*GPGPPXXXXIAXXXAXXPSXCQXXLXXPPX 845
+G P P G P P P G PG P A P C+ PP
Sbjct: 101 EGCCLPGPPGPAGVPGKPGKP--GRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPG 158
Query: 846 PPFXP 860
PP P
Sbjct: 159 PPGPP 163
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/55 (36%), Positives = 20/55 (36%)
Frame = -2
Query: 849 GGGGGXIXXFGTGWGXXXPFXRXVX*XGVXGPNXNLGGXXGGXGGXLGAXMGXXG 685
GGGGG G GWG R G G G GG GG G G G
Sbjct: 220 GGGGGGGYGSGGGWGGGGG-GRDRDRGGWGGGGGGRGYGGGGGGGGYGYGGGGGG 273
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +2
Query: 719 PXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
P P P R P P T R P+P P PPPPP
Sbjct: 536 PSPEPSPVREPTPPPPPREPTPREP---TPEPEPVREPTPPPPP 576
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Frame = +3
Query: 600 PPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNP------XGPPXN-PPXPHXNLRGYX*G 758
PPP PPP G G PP P GPP P PH + + G
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMM--FRGG 347
Query: 759 PGPP 770
P PP
Sbjct: 348 PYPP 351
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Frame = +3
Query: 600 PPPXXXGXPPPXXKXLKXKXKXKGXGXPPQXNP------XGPPXN-PPXPHXNLRGYX*G 758
PPP PPP G G PP P GPP P PH + + G
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMM--FRGG 347
Query: 759 PGPP 770
P PP
Sbjct: 348 PYPP 351
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = +2
Query: 707 PXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPPP 850
P PP PP P L P P P P P PPPPP
Sbjct: 559 PIPPPPPPPLPQNLSGAPPPP------------PPPPPMLGGPPPPPP 594
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = +3
Query: 666 KGXGXPPQXNPXGPPXNPPXPHXNLRGYX*GPGPPXXXXIAXXXAXXPSXCQXXLXXPPX 845
+G P P G P P P G PG P A P C+ PP
Sbjct: 101 EGCCLPGPPGPAGVPGKPGKP--GRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPG 158
Query: 846 PPFXP 860
PP P
Sbjct: 159 PPGPP 163
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +2
Query: 707 PXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPP 847
P P PP PP + P P ++ G P P P P PP
Sbjct: 268 PSVTPMPPPMPPTPGMTPRPPPPPSS---GMWPPPPPPPPGRTPGPP 311
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +2
Query: 707 PXKPPXPPXXPPRLXLGPXTPXXXTNRXXGCXXPQPVPNXXXXPPPP 847
P P PP PP + P P ++ G P P P P PP
Sbjct: 278 PSVTPMPPPMPPTPGMTPRPPPPPSS---GMWPPPPPPPPGRTPGPP 321
>AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical
protein Y69A2AR.14 protein.
Length = 555
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Frame = +2
Query: 704 APXKPPXPPXXPPRLXLGPXTPXXXTNRXX------GCXXPQPVPNXXXXPPPPP 850
+P KPP P P P P + R P+ P PPPPP
Sbjct: 258 SPTKPPTPTSRPTSAPTIPPQPSANSTRAPDIGKTLSTQPPRRTPQPHPKPPPPP 312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,608,653
Number of Sequences: 27780
Number of extensions: 215343
Number of successful extensions: 1442
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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