Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_B22
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   4.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   8.1  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 395  IWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYSSQLFSMLYCLGDLLDVLKHGRLED-M 219
            +W   +       G+    Y+ + CLTT+   Y S L +  Y    ++    + +LED M
Sbjct: 1787 VWRVSIRDFAEVSGATDSFYMGIMCLTTALCKYHSALLND-YRKSVIMSAWNYIKLEDPM 1845

Query: 218  VKQ 210
            VKQ
Sbjct: 1846 VKQ 1848


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 468 LDERKD--QPEACSSTLLLPRASTEPTAXVSTCPLLTR 575
           ++E  D  QP + S TL  P A T      ST  LLTR
Sbjct: 528 MEEEADVSQPSSSSFTLSFPSALTSSKVSSSTSHLLTR 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,528
Number of Sequences: 5004
Number of extensions: 55951
Number of successful extensions: 153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)