Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_B21
(1411 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.069
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.069
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.069
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 35 0.12
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 2.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.4
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 6.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.0
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.9 bits (79), Expect = 0.069
Identities = 27/104 (25%), Positives = 28/104 (26%)
Frame = +2
Query: 866 TXSLPPXXRTXPSXTXHXPPSXPXXLXXYGXXXXXXSHPPPPPXXXLLXSXXXPPXXTPX 1045
T PP P PP P L PPPPP S PP P
Sbjct: 710 TGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP----PPPPPGGLPPISGGPPPPPPPP 765
Query: 1046 XXAPPPRXXXXXXXLXXXPPPXTXXQFAXPXPSXHXDLFXPPRV 1177
PPP PPP P D P +V
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKV 809
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.9 bits (79), Expect = 0.069
Identities = 27/104 (25%), Positives = 28/104 (26%)
Frame = +2
Query: 866 TXSLPPXXRTXPSXTXHXPPSXPXXLXXYGXXXXXXSHPPPPPXXXLLXSXXXPPXXTPX 1045
T PP P PP P L PPPPP S PP P
Sbjct: 710 TGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP----PPPPPGGLPPISGGPPPPPPPP 765
Query: 1046 XXAPPPRXXXXXXXLXXXPPPXTXXQFAXPXPSXHXDLFXPPRV 1177
PPP PPP P D P +V
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKV 809
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.9 bits (79), Expect = 0.069
Identities = 27/104 (25%), Positives = 28/104 (26%)
Frame = +2
Query: 866 TXSLPPXXRTXPSXTXHXPPSXPXXLXXYGXXXXXXSHPPPPPXXXLLXSXXXPPXXTPX 1045
T PP P PP P L PPPPP S PP P
Sbjct: 293 TGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP----PPPPPGGLPPISGGPPPPPPPP 348
Query: 1046 XXAPPPRXXXXXXXLXXXPPPXTXXQFAXPXPSXHXDLFXPPRV 1177
PPP PPP P D P +V
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKV 392
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 35.1 bits (77), Expect = 0.12
Identities = 20/68 (29%), Positives = 22/68 (32%)
Frame = +2
Query: 860 RXTXSLPPXXRTXPSXTXHXPPSXPXXLXXYGXXXXXXSHPPPPPXXXLLXSXXXPPXXT 1039
R T PP P + PP L G PPPP L + PP
Sbjct: 524 RSTSKDPPRPAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPP 583
Query: 1040 PXXXAPPP 1063
P PPP
Sbjct: 584 PMLGGPPP 591
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 2.6
Identities = 33/148 (22%), Positives = 41/148 (27%)
Frame = +2
Query: 701 PXPSLXXXXPAPXXXGXPXPXXPSXNLXXXPRXXVXXXHPARXXXPXXTPXHXRXTXSLP 880
P L AP G P PS + P+ + R T H +
Sbjct: 1268 PNHPLLQMDTAPPQNGSDPPQ-PSESCPAPPKNSSKKRNNRRGNR-RNTNEHIQANHEDS 1325
Query: 881 PXXRTXPSXTXHXPPSXPXXLXXYGXXXXXXSHPPPPPXXXLLXSXXXPPXXTPXXXAPP 1060
T S + PP P PPPPP + P P PP
Sbjct: 1326 DSFSTSRSSSPSPPPPPPPPPPPSDDLTPVPPPPPPPP------TMSKAPTGVPLPVPPP 1379
Query: 1061 PRXXXXXXXLXXXPPPXTXXQFAXPXPS 1144
P L PPP + P P+
Sbjct: 1380 PPLFSPSMILPPPPPPLPSEEKKNPLPT 1407
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 3.4
Identities = 31/130 (23%), Positives = 33/130 (25%)
Frame = +2
Query: 671 YPXTXXXXSXPXPSLXXXXPAPXXXGXPXPXXPSXNLXXXPRXXVXXXHPARXXXPXXTP 850
YP P P P P P PS + P P P P
Sbjct: 260 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPP-PSSGMWPPPPPPPPGRTPGPPGMPGMPP 318
Query: 851 XHXRXTXSLPPXXRTXPSXTXHXPPSXPXXLXXYGXXXXXXSHPPPPPXXXLLXSXXXPP 1030
PP R P PP P + G PPPPP PP
Sbjct: 319 P--------PPPSRFGPPGMGGMPPPPPPGMRYPGGMP-----PPPPPRYPSAGPGMYPP 365
Query: 1031 XXTPXXXAPP 1060
APP
Sbjct: 366 PPPSRPPAPP 375
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 3.4
Identities = 31/130 (23%), Positives = 33/130 (25%)
Frame = +2
Query: 671 YPXTXXXXSXPXPSLXXXXPAPXXXGXPXPXXPSXNLXXXPRXXVXXXHPARXXXPXXTP 850
YP P P P P P PS + P P P P
Sbjct: 270 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPP-PSSGMWPPPPPPPPGRTPGPPGMPGMPP 328
Query: 851 XHXRXTXSLPPXXRTXPSXTXHXPPSXPXXLXXYGXXXXXXSHPPPPPXXXLLXSXXXPP 1030
PP R P PP P + G PPPPP PP
Sbjct: 329 P--------PPPSRFGPPGMGGMPPPPPPGMRYPGGMP-----PPPPPRYPSAGPGMYPP 375
Query: 1031 XXTPXXXAPP 1060
APP
Sbjct: 376 PPPSRPPAPP 385
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.5 bits (63), Expect = 6.0
Identities = 25/96 (26%), Positives = 28/96 (29%), Gaps = 5/96 (5%)
Frame = +2
Query: 899 PSXTXHXPPSXPXXLXXYGXXXXXXSHPPPPPXXXLLXSXXXPPXXT-----PXXXAPPP 1063
P T PP P Y PPP P PP + APPP
Sbjct: 45 PQQTAPPPPPAP-----YPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPP 99
Query: 1064 RXXXXXXXLXXXPPPXTXXQFAXPXPSXHXDLFXPP 1171
PPP Q A P P+ + PP
Sbjct: 100 APYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPP 135
Score = 29.1 bits (62), Expect = 7.9
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +2
Query: 980 PPPPPXXXLLXSXXXPPXXTPXXXAPPPRXXXXXXXLXXXPPPXTXXQFAXPXPS 1144
PPPPP P T PPP PPP Q A P P+
Sbjct: 29 PPPPPKPAPYVEQSAQPQQT--APPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPA 81
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 6.0
Identities = 18/65 (27%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Frame = +2
Query: 980 PPPPPXXXLLXSXXXPPXXTPXXX-APPPRXXXXXXXLXXXPPPXTXXQFAXPXPSXHXD 1156
PPPPP PP P PPPR P P P P
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNP 183
Query: 1157 LFXPP 1171
PP
Sbjct: 184 PRTPP 188
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 6.0
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +2
Query: 980 PPPPPXXXLLXSXXXPPXXTPXXXAPPPRXXXXXXXLXXXPPPXTXXQFAXPXPSXHXDL 1159
PPPP L PP PPPR PPP P +
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299
Query: 1160 FXPPR 1174
PPR
Sbjct: 300 PPPPR 304
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 6.0
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +2
Query: 980 PPPPPXXXLLXSXXXPPXXTPXXXAPPPRXXXXXXXLXXXPPPXTXXQFAXPXPSXHXDL 1159
PPPP L PP PPPR PPP P +
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320
Query: 1160 FXPPR 1174
PPR
Sbjct: 321 PPPPR 325
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 6.0
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +2
Query: 980 PPPPPXXXLLXSXXXPPXXTPXXXAPPPRXXXXXXXLXXXPPPXTXXQFAXPXPSXHXDL 1159
PPPP L PP PPPR PPP P +
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305
Query: 1160 FXPPR 1174
PPR
Sbjct: 306 PPPPR 310
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 7.9
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = -2
Query: 1140 GXGXAN*XCVXGGGXXXRXXXXXXXRGGGAXXYGVXXGGXXXEXRSXXXGGGGGC 976
G G C GGG GGG G G GGGGGC
Sbjct: 109 GCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGC 163
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 7.9
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = -2
Query: 1140 GXGXAN*XCVXGGGXXXRXXXXXXXRGGGAXXYGVXXGGXXXEXRSXXXGGGGGC 976
G G C GGG GGG G G GGGGGC
Sbjct: 109 GCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGC 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,060
Number of Sequences: 27780
Number of extensions: 192538
Number of successful extensions: 678
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4006571030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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