Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_B20
         (956 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   6.5  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   6.5  
Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   8.6  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   8.6  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   8.6  

>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/41 (39%), Positives = 16/41 (39%)
 Frame = -1

Query: 914 GLXGXGGGXX*XXRRGGNXXGRRGXGXXXXXRXXSGRXXGG 792
           G  G GGG      RGG   GR G G     R   G   GG
Sbjct: 90  GGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGG 130


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/95 (25%), Positives = 25/95 (26%)
 Frame = -1

Query: 914 GLXGXGGGXX*XXRRGGNXXGRRGXGXXXXXRXXSGRXXGGSXNSXXRXDVXXXXFGXXX 735
           G  G GGG       G    G  G G         G   GG              +G   
Sbjct: 128 GYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGG 187

Query: 734 CXGXXXGXXXREMGGXEXXXXXGGXXXXGXGGDXG 630
             G   G     MGG        G    G GGD G
Sbjct: 188 FGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGG 222



 Score = 28.3 bits (60), Expect = 8.6
 Identities = 34/147 (23%), Positives = 36/147 (24%)
 Frame = -1

Query: 914 GLXGXGGGXX*XXRRGGNXXGRRGXGXXXXXRXXSGRXXGGSXNSXXRXDVXXXXFGXXX 735
           G  G GGG       GG   G  G G         G   GG              +G   
Sbjct: 78  GYGGSGGGAF-GGFNGGYGQGGYGGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGG 136

Query: 734 CXGXXXGXXXREMGGXEXXXXXGGXXXXGXGGDXGXWXXXXWXXXGRGXGXRTPRXXGGX 555
             G   G     MGG       GG      GG  G          G G G       GG 
Sbjct: 137 YGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGG----FGGGG 192

Query: 554 XXXXXGXXXXXXXGXPXXXXXXFGGXG 474
                G       G        +GG G
Sbjct: 193 MGGYGGGMGGGGYGGGGMGGGGYGGGG 219


>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/63 (28%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
 Frame = +2

Query: 575 ASAPXXXAPXXPTSXXXTXPRPPXSXSXXXLXXAXEXXFR---PSLSPXXPXPXPXXPXP 745
           AS P       PT+     P PP          A         P +SP  P P P  P P
Sbjct: 307 ASEPTEAEADAPTTFILPPPPPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPP 366

Query: 746 QXP 754
             P
Sbjct: 367 PPP 369


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/53 (35%), Positives = 20/53 (37%)
 Frame = -1

Query: 947 GWXXXDXXAXXGLXGXGGGXX*XXRRGGNXXGRRGXGXXXXXRXXSGRXXGGS 789
           GW   D  A     G GGG      RGG+  G RG G         G   GGS
Sbjct: 37  GWGGSDASAGASAGGTGGGR--GGGRGGSGGG-RGGGSGGGRGGSGGAGAGGS 86


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/70 (24%), Positives = 18/70 (25%)
 Frame = +1

Query: 538 PXXXXSXPPXXRGVRXPXPRPXXXHXXXXHXPXSPPQPXXXXPPXXXXXSXPPISLXXXP 717
           P       P   G   P P P             PP P    PP     S PP      P
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 298

Query: 718 XXXPXQXXXP 747
              P +   P
Sbjct: 299 PPPPPRGSPP 308


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/70 (24%), Positives = 18/70 (25%)
 Frame = +1

Query: 538 PXXXXSXPPXXRGVRXPXPRPXXXHXXXXHXPXSPPQPXXXXPPXXXXXSXPPISLXXXP 717
           P       P   G   P P P             PP P    PP     S PP      P
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 319

Query: 718 XXXPXQXXXP 747
              P +   P
Sbjct: 320 PPPPPRGSPP 329


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/70 (24%), Positives = 18/70 (25%)
 Frame = +1

Query: 538 PXXXXSXPPXXRGVRXPXPRPXXXHXXXXHXPXSPPQPXXXXPPXXXXXSXPPISLXXXP 717
           P       P   G   P P P             PP P    PP     S PP      P
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 304

Query: 718 XXXPXQXXXP 747
              P +   P
Sbjct: 305 PPPPPRGSPP 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,010,129
Number of Sequences: 27780
Number of extensions: 165683
Number of successful extensions: 548
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)