Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_B19
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   5.6  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   7.4  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   9.8  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   9.8  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.8  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +2

Query: 623 VALTRKYVIITELSKKTNNS*CTPTIPIPWTYPNNEDRIAYLTEDVG----LNAYYYYF 787
           V L  +Y I+TE++K    S  +PT PI +T   + D  A +  D G    L+  Y YF
Sbjct: 61  VHLENEYNILTEIAKDERASKFSPT-PIEFTSFPHIDLSACIAYDFGHGAELSTSYAYF 118


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 339 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVE-KRQNLLLLFDE 163
           G  S  +HHH++ +  H  +  L G   EV G    L++ +D + +      N++ ++D 
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG----LAWRSDGLQLASGGNDNVVQIWDA 333

Query: 162 RS 157
           RS
Sbjct: 334 RS 335


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 231 VLQSRPGLQHRGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKN 374
           + Q+  GL++   +G++H+         D +G+I   +FGI   L  N
Sbjct: 503 IKQTLKGLEYLHSRGIVHRDIKGANILVDNKGKIKISDFGISKKLELN 550


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = -2

Query: 483 EHSLVHVDSGVACCFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKESDLVHHH 310
           ++ +++VD  +A CFV+  +  G    LE+ + +  +  + +  F +LG+   L+ HH
Sbjct: 539 DNLILNVDGCIAVCFVDLLRNCGAF-TLEEANEYI-NLGILNGMF-VLGRSIGLIGHH 593


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
 Frame = -2

Query: 417  GIIEQLEQRDGFFPHFFVKD---REFQILGKESDLVHHHEIFVGFHVCVAVLA-GLDVEV 250
            G  + +E        F++K+   +E Q   K  D +HH EI++  H+    +A  L +  
Sbjct: 1029 GFKKSIEDSYTMKKRFWIKEYFLKEVQASWKTDDNLHHGEIYLRNHILSDEMANNLSILP 1088

Query: 249  LGDFVVLSFIADLVNVVEKRQ--NLLLLFDERSVNRCRFEFRYGATESEGN 103
            +     +S+ ++ V  V  R+   L+L F   +    R++  +    ++ N
Sbjct: 1089 IRIQAWVSYDSEKVTTVCPREPFKLVLEFFGHADTNMRYKISWTQLNTQAN 1139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,254,995
Number of Sequences: 5004
Number of extensions: 66861
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)