Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_B12
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760...    30   2.8  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.5  
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887...    29   6.5  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  

>06_03_1190 -
           28274801-28275163,28275662-28275853,28275965-28276088,
           28276177-28276320,28276524-28276640,28277189-28277308,
           28277433-28277521,28277609-28277685,28278250-28278322,
           28278578-28279012,28280247-28280442,28281270-28281490,
           28281591-28281703,28282552-28283146,28283236-28283418,
           28283548-28283712,28283808-28284029
          Length = 1142

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 615 PPGSSLVRSPVPXPAAYRIPVRLSPLR-EXWXFLIXH 722
           PP    +   +P PA YR+P+R    R E W   I H
Sbjct: 112 PPAHRRLNCLIPPPAGYRVPIRWPRSRDEVWKANIPH 148


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 338 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 493
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>02_02_0315 +
           8872199-8872815,8873141-8873243,8873346-8873405,
           8873558-8873632,8873718-8873792,8873876-8873956,
           8874466-8874657,8874762-8874947,8875047-8875094
          Length = 478

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 774 AEPPVQPRPLAPYP 815
           A PP  PRPL+PYP
Sbjct: 449 AAPPAAPRPLSPYP 462


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 287 NESAN---ARGEAVCVLGALPLPRSLTRCAR 370
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,455,052
Number of Sequences: 37544
Number of extensions: 518673
Number of successful extensions: 1552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)