Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_B12
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical p...    31   1.1  
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    31   1.1  
AF077536-10|AAK31408.2|  229|Caenorhabditis elegans Hypothetical...    29   5.8  

>U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical
           protein C17G10.6b protein.
          Length = 487

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 818 PGIRGQRSGLNGGFGTQPXLEGXPTPN*DTYSVXYEKXPRFPKGRKADRYPVSGRXR 648
           P +RG+    +GG    P  +  P  +   + V Y++    P  R   R P  GR R
Sbjct: 57  PWVRGRHRPRHGGHDKAPWNQNDPAHSDHDHGVDYDEQTTPPPPRHRGRRPTGGRGR 113


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 818 PGIRGQRSGLNGGFGTQPXLEGXPTPN*DTYSVXYEKXPRFPKGRKADRYPVSGRXR 648
           P +RG+    +GG    P  +  P  +   + V Y++    P  R   R P  GR R
Sbjct: 108 PWVRGRHRPRHGGHDKAPWNQNDPAHSDHDHGVDYDEQTTPPPPRHRGRRPTGGRGR 164


>AF077536-10|AAK31408.2|  229|Caenorhabditis elegans Hypothetical
           protein C16A11.7 protein.
          Length = 229

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 662 SGRXRNRRAHEGASRGKRLVSL*SCRVSPTSDLSVDFCDARSGGRSLWKNA 510
           SGR  N++  +GASRG R  S+ +   + ++  +   C   S G  + K A
Sbjct: 4   SGRMENKKQSKGASRGSRRRSINTSNSNTSARHAFSPCSYSSSGTEIRKVA 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,632,580
Number of Sequences: 27780
Number of extensions: 395679
Number of successful extensions: 1046
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)