Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_B10
         (995 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.33 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.58 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.3  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   5.4  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   5.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   8.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 806 PXPPPPXPXPXXPPRPXPPXP 868
           P PPPP P    P +P PP P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 30.3 bits (65), Expect = 0.44
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 812 PPPPXPXPXXPPRPXPPXPXXP 877
           PPPP P P   P   PP P  P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 806 PXPPPPXPXPXXPPRPXPPXP 868
           P PPPP      PP P PP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = +2

Query: 806 PXP-PPPXPXPXXPPRPXPP 862
           P P PPP P    PP P PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 812 PPPPXPXPXXPPRPXPPXPXXP 877
           PPPP P       P PP P  P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 806  PXPPPPXPXPXXPPRPXPPXPXXP 877
            P PPPP P    PP   PP P  P
Sbjct: 1705 PTPPPP-PMSVPPPPSAPPMPAGP 1727



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = +2

Query: 806  PXPPPPXPXPXXPP-RPXPPXP 868
            P PP   P P  PP  P PP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -3

Query: 876 GXXGXGGXGRGGXXGXGXGG--GGXG 805
           G  G  G GRGG  G G GG  GG G
Sbjct: 23  GGRGGFGGGRGGARGGGRGGARGGRG 48


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 812 PPPPXPXPXXPPRPXPPXPXXP 877
           P P  P P  PP P  P P  P
Sbjct: 113 PVPEEPLPGEPPLPDEPVPEEP 134


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 867 GXGGXG-RGGXXGXGXGGGGXG 805
           G GG G RGG  G G  GGG G
Sbjct: 452 GRGGFGGRGGFGGRGGFGGGRG 473


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.6 bits (46), Expect(2) = 8.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 806 PXPPPPXPXP 835
           P PPPP P P
Sbjct: 905 PTPPPPPPLP 914



 Score = 21.4 bits (43), Expect(2) = 8.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 833 PXXPPRPXPPXP 868
           P  PP P PP P
Sbjct: 942 PAFPPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 773,997
Number of Sequences: 5004
Number of extensions: 6699
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)