Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_B09
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0500 + 3866752-3866799,3866854-3866898,3867398-3867679 32 0.70
04_04_1106 - 30948626-30948724,30948841-30949176,30949231-309493... 31 1.6
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 30 2.8
05_02_0070 - 6327352-6327582,6327684-6327944 29 3.7
03_05_0494 - 24898268-24898576,24898674-24898781,24900428-249005... 29 3.7
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239 29 4.9
02_04_0129 + 20020388-20021215 29 4.9
12_02_1188 + 26801833-26802225 29 6.5
08_02_0769 - 21012521-21013331,21013692-21013821,21013915-21014047 29 6.5
08_02_0051 + 11683636-11684046 29 6.5
05_04_0084 - 17788077-17789240 29 6.5
02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524... 29 6.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.6
07_03_1014 + 23304245-23304465,23304560-23304597,23304691-233049... 28 8.6
>11_01_0500 + 3866752-3866799,3866854-3866898,3867398-3867679
Length = 124
Score = 31.9 bits (69), Expect = 0.70
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -3
Query: 712 ASRKGRKGGQVSGKRQGSEPGRAXEG 635
AS KGR GG+V G+RQ S P A EG
Sbjct: 73 ASAKGRSGGRVKGERQ-SHPAGAREG 97
>04_04_1106 -
30948626-30948724,30948841-30949176,30949231-30949353,
30949425-30949517,30949603-30949806,30949884-30950134,
30951011-30952391,30952737-30953174
Length = 974
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 612 PGVSPLEAPSCALPGSXPCRLPDTCPPFLPFREAXRFSHSSRLVRYXQFRC 764
PG++ P CA+P S P P+ PP P R+A + VR + C
Sbjct: 35 PGLTEFICPDCAMPQSLP---PELMPPPPPRRKALPLPRGAADVRGARLPC 82
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 712 ASRKGRKGGQVSGKRQGSEPGRAXEGASRGETPGI 608
A+R RKGG+ SGK +G G +RG G+
Sbjct: 597 ANRDSRKGGKKSGKGKGGGGGGGGGSGARGRGRGV 631
>05_02_0070 - 6327352-6327582,6327684-6327944
Length = 163
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 618 VSPLEAPSCALPGSXP-CRLPDTCPPFLPFREAXRFSHSSRLVRY 749
++ L AP + PGS P LP T PP P A SSR + Y
Sbjct: 1 MASLPAPIASTPGSTPPSSLPSTSPPPPPAANATEDQPSSRQLVY 45
>03_05_0494 -
24898268-24898576,24898674-24898781,24900428-24900515,
24900839-24900975,24901396-24901716
Length = 320
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 620 FPPGSSLXRSPWFRXLPL--TGYLSALSPLSGSVXLFS*LTPGKVSPVSVLGRFASQAGP 793
F G S+ SP R L L +G L+ P + L + T +P S GP
Sbjct: 61 FYSGGSVQLSPCDRRLSLASSGQLAVFRPKVDEISLLTINTTTGFNPNSHFSVTYCHVGP 120
Query: 794 VLHPTPPVQ 820
LHP PV+
Sbjct: 121 FLHPDIPVE 129
>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
Length = 569
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 686 SALSPLSGSVXLFS*LTPGKVSPVSVLGRFASQAGPVLHPTPPVQPRTGWXLYPGLT 856
S L+ L G + L+PG+VSP+ + P+ P PPV P + P T
Sbjct: 87 SRLAGLGGLIDPRRILSPGRVSPIDLDDSAPPLPLPLPLPPPPVTPAAETVVVPAET 143
>02_04_0129 + 20020388-20021215
Length = 275
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = +2
Query: 686 SALSPLSGSVXLFS*LTPGKVSPVSVLGRFASQAGPVLHPTPPVQP 823
SAL P + S LFS L +S +S L F AG P PP P
Sbjct: 200 SALPPAASS-GLFSPLDQASLSWLSDLSPFLHSAGAAAAPPPPFAP 244
>12_02_1188 + 26801833-26802225
Length = 130
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -3
Query: 712 ASRKGRKGGQVSGKRQGSEPGRAXEGASRGETPGIFIVLSG 590
A R+G GG SGKR S A EG G P +++V G
Sbjct: 26 APRRGGGGGGSSGKR-SSSAAAAHEGVPEGHVP-VYVVGEG 64
>08_02_0769 - 21012521-21013331,21013692-21013821,21013915-21014047
Length = 357
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 708 EAXRFSHSSRLVRYXQFRC*VGSPPKLGLCCTQPPRFSPEP 830
E+ R +RL R + R +P KL T PP +P P
Sbjct: 155 ESARLEAEARLARESKMRIAASTPSKLHAQSTNPPASTPSP 195
>08_02_0051 + 11683636-11684046
Length = 136
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -3
Query: 712 ASRKGRKGGQVSGKRQGSEPGRAXEGASRGE---TPGIFIVLSGFATSDLSVDFCDARSG 542
AS R GG G ++G + A G + E PG GFA + + D SG
Sbjct: 49 ASMGARPGGDGGGWQRGEKGWLAVVGRKQHEEKAAPG-----DGFACNANGFEENDRHSG 103
Query: 541 GRSLWK 524
GR++W+
Sbjct: 104 GRAMWR 109
>05_04_0084 - 17788077-17789240
Length = 387
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 721 KRHASRKGRKGGQVSGKRQGSEPGRAXEGASRGE 620
KR +KG+KG V GK++ E G GA GE
Sbjct: 196 KREKGKKGKKGKDV-GKKRKREDGGGGGGAQDGE 228
>02_05_0668 +
30749474-30750007,30750818-30751403,30751405-30752497,
30753105-30753255,30754055-30754870
Length = 1059
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 9 HYHLTIGNP*DLNVVPRPRISL 74
HY+L + +P D ++VPRPR+S+
Sbjct: 78 HYYLKV-HPSDRDIVPRPRVSM 98
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 294 NESAN---ARGEAVCVLGALPLPRSLTRCAR 377
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>07_03_1014 +
23304245-23304465,23304560-23304597,23304691-23304994,
23305104-23305314,23305529-23305546
Length = 263
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 534 LRPPERASQKSTLKSXVAKPDRTIKIPGVSPLEAPSCALPG 656
LR E +S +++ A PDR I PG +P +LPG
Sbjct: 37 LRQAESSSARASFAVRAAAPDRPIWFPGSTPPPWLDGSLPG 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,286,827
Number of Sequences: 37544
Number of extensions: 526963
Number of successful extensions: 1672
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -