Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_B08
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.64 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.6  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 629 PPXKLPSCALPGSDPCRLPDTCPPXLPFGXRGXXLIP 739
           PP   P  +LP S P  LP + PP LP G      +P
Sbjct: 415 PPVPTPP-SLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 660 LVPTPAAYRIPVRPXSPSGXVAPFSYPHPG 749
           +VPTPA   IPV P +P     P   P PG
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 708 GXKGGQVSGKRQGSEPGRAHEGSXQGG 628
           G +GG   G R G+  GR   G  +GG
Sbjct: 30  GGRGGARGGGRGGARGGRGGRGGARGG 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,224
Number of Sequences: 5004
Number of extensions: 48398
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)