Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_B07
(1361 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.088
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.088
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.088
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 32 1.1
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 31 2.5
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 30 4.4
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 4.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.8
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 5.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.8
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.5 bits (78), Expect = 0.088
Identities = 29/98 (29%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Frame = +1
Query: 538 PXPXRXXKYXXXGQPERPVXPXSPXHPXSXLPXPPP-XXPPVXPSXXXXXPXXXXSXXXX 714
P P G P P SP P + P PPP PP P+ P S
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP- 299
Query: 715 XXCQSPPXXSPPXINLLDP---XXPPXXKTXSTXKKPQ 819
PP SPP +L P PP T S P+
Sbjct: 300 ---PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 334
Score = 30.7 bits (66), Expect = 2.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +3
Query: 537 PPPXSXXKIXXSWATXAPXXSXLPXXPXFPXPPXPPXXSPRXP 665
PPP + S + P + P P PP PP SP P
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 283
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.5 bits (78), Expect = 0.088
Identities = 29/98 (29%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Frame = +1
Query: 538 PXPXRXXKYXXXGQPERPVXPXSPXHPXSXLPXPPP-XXPPVXPSXXXXXPXXXXSXXXX 714
P P G P P SP P + P PPP PP P+ P S
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP- 320
Query: 715 XXCQSPPXXSPPXINLLDP---XXPPXXKTXSTXKKPQ 819
PP SPP +L P PP T S P+
Sbjct: 321 ---PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 355
Score = 30.7 bits (66), Expect = 2.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +3
Query: 537 PPPXSXXKIXXSWATXAPXXSXLPXXPXFPXPPXPPXXSPRXP 665
PPP + S + P + P P PP PP SP P
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 304
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.5 bits (78), Expect = 0.088
Identities = 29/98 (29%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Frame = +1
Query: 538 PXPXRXXKYXXXGQPERPVXPXSPXHPXSXLPXPPP-XXPPVXPSXXXXXPXXXXSXXXX 714
P P G P P SP P + P PPP PP P+ P S
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP- 305
Query: 715 XXCQSPPXXSPPXINLLDP---XXPPXXKTXSTXKKPQ 819
PP SPP +L P PP T S P+
Sbjct: 306 ---PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 340
Score = 30.7 bits (66), Expect = 2.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +3
Query: 537 PPPXSXXKIXXSWATXAPXXSXLPXXPXFPXPPXPPXXSPRXP 665
PPP + S + P + P P PP PP SP P
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 289
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 31.9 bits (69), Expect = 1.1
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +3
Query: 588 PXXSXLPXXPXFPXPPXPPXXSPRXPLXXX*XSPXXKXKXXKXXLPIXPXXFPPXNKSPX 767
P + P P PP PP +P P +P + + + +P PP N P
Sbjct: 363 PVVTPAPEELTTPPPPAPPPPAPAVPEEAQAPTPAPE-EAPEAQIPAETAQIPPENAVPE 421
Query: 768 SPXAP 782
+P P
Sbjct: 422 APEEP 426
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 624 PXPPXPPXXSPRXPLXXX*XSPXXKXKXXKXXLPIXPXXFPPXNKSPXSPXAP 782
P PP PP +P P +P + + + +P PP N P +P P
Sbjct: 387 PPPPAPPPPAPAVPEEAQAPTPAPE-EAPEAQIPAETAQIPPENAVPEAPEEP 438
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 29.9 bits (64), Expect = 4.4
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Frame = +2
Query: 596 IXSPLXTXXPXSPXPPPXFPPXXPXXXXXXPXXKXQXKXXXXANXPPPFPPLX*I---SX 766
I P+ T S PP P P P + + PPP PPL I S
Sbjct: 444 IKFPISTGTSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSS 503
Query: 767 IPXSP 781
+P P
Sbjct: 504 VPPPP 508
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.9 bits (64), Expect = 4.4
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Frame = +2
Query: 596 IXSPLXTXXPXSPXPPPXFPPXXPXXXXXXPXXKXQXKXXXXANXPPPFPPLX*I---SX 766
I P+ T S PP P P P + + PPP PPL I S
Sbjct: 451 IKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSS 510
Query: 767 IPXSP 781
+P P
Sbjct: 511 VPPPP 515
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 5.8
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +1
Query: 538 PXPXRXXKYXXXGQPERPVXPXSPXHPXSXLPXPPPXXPPVXPSXXXXXP 687
P P +Y G P P P P P PPP PP PS P
Sbjct: 335 PPPPPGMRYPG-GMPPPP-PPRYPSAGPGMYPPPPPSRPPAPPSGHGMIP 382
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 574 GQPERPVXPXSPXHPXSXLPXPPPXXP 654
G P RP P P + LP PPP P
Sbjct: 126 GAPGRPGNPGPPGRDGALLPGPPPKPP 152
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 5.8
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +1
Query: 538 PXPXRXXKYXXXGQPERPVXPXSPXHPXSXLPXPPPXXPPVXPSXXXXXP 687
P P +Y G P P P P P PPP PP PS P
Sbjct: 345 PPPPPGMRYPG-GMPPPP-PPRYPSAGPGMYPPPPPSRPPAPPSGHGMIP 392
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,144,618
Number of Sequences: 27780
Number of extensions: 157737
Number of successful extensions: 1112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3840064182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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