Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_B06
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0706 + 19627024-19627380,19629945-19629976,19630657-196307...    30   2.1  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    30   2.8  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   6.5  
02_02_0240 + 8196140-8198248,8198381-8198650                           29   6.5  
06_03_1310 + 29238644-29240260                                         28   8.5  

>09_04_0706 +
           19627024-19627380,19629945-19629976,19630657-19630751,
           19632116-19632281,19632881-19632938,19633014-19633061,
           19633274-19633464,19633580-19633702,19635174-19635289,
           19635841-19635924,19636009-19636259,19636438-19636647
          Length = 576

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 235 NTRLERLSVMKKRREGWRSGRPSKIMY 315
           N+R E+ S +  R+EG R G+PS+I++
Sbjct: 470 NSRQEKSSGVPSRKEGTRKGKPSEILH 496


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
 Frame = +2

Query: 623 NXXXNLXXXGPPPXXKGXXKXXXXGKLGXPXPXXXPPFXPX----KNXLPPXXXXXFXXS 790
           N   N     PPP   G          G P P   PP+       +  LPP     +   
Sbjct: 328 NNAYNSDSAVPPPSSYGGGPGSYPPSYGAPPPN--PPYSGGAPGGQGSLPPSYDGGYGGR 385

Query: 791 PXPGGGXXXXFPP 829
           P PGGG     PP
Sbjct: 386 PMPGGGGPGAPPP 398


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/54 (33%), Positives = 18/54 (33%)
 Frame = +2

Query: 710 PXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPPLXXPPXPPGXXXFP 871
           P P   PP  P K   PP         P P  G     PP   PP P G    P
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP---PPPPKGGASRP 389



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = +2

Query: 710 PXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPPLXXPPXPP 853
           P P   PP  P     PP         P P  G     PP   PP PP
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPP-PPAKGPPPPP 357


>02_02_0240 + 8196140-8198248,8198381-8198650
          Length = 792

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
 Frame = +2

Query: 617 VPNXXXNLXXXGPPPXXKGXXKXXXXGKLGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPX 796
           VP+    +    PPP           G +G P P   PP  P +N   P     +   P 
Sbjct: 584 VPHMMPTMHPPPPPPIPGQPQVIRMPGSMG-PMPTNIPPPPPGQNPYMPGPPRPYSMPPP 642

Query: 797 PG-GGXXXXFPPLXXPPXPP 853
           P          P+  P  PP
Sbjct: 643 PHMPTMATMVNPIGIPQPPP 662


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/62 (30%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
 Frame = +2

Query: 701 LGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPPL-----XXPPXPPGXXX 865
           L  P P   PP         P        SP  GGG    FPP+       PP PP    
Sbjct: 457 LTPPPPTTTPPGHHAPVPGTPSSPPSSSWSPPQGGGGKLPFPPVHGVAYSSPPPPPSGDK 516

Query: 866 FP 871
            P
Sbjct: 517 LP 518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,025,191
Number of Sequences: 37544
Number of extensions: 344902
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)