Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_B06
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.35
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.35
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.35
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 3.3
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 5.8
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.35
Identities = 21/68 (30%), Positives = 21/68 (30%)
Frame = +2
Query: 653 PPPXXKGXXKXXXXGKLGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPPL 832
PPP G G P P PP PP P P G PP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP- 785
Query: 833 XXPPXPPG 856
PP PPG
Sbjct: 786 --PPPPPG 791
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/74 (32%), Positives = 24/74 (32%)
Frame = +2
Query: 650 GPPPXXKGXXKXXXXGKLGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPP 829
G PP G G G P PP P LPP P PGG PP
Sbjct: 718 GLPPITGGPPPPPPPG--GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG-----CPP 770
Query: 830 LXXPPXPPGXXXFP 871
PP P G P
Sbjct: 771 PPPPPPPGGFKGGP 784
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.35
Identities = 21/68 (30%), Positives = 21/68 (30%)
Frame = +2
Query: 653 PPPXXKGXXKXXXXGKLGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPPL 832
PPP G G P P PP PP P P G PP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP- 785
Query: 833 XXPPXPPG 856
PP PPG
Sbjct: 786 --PPPPPG 791
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/74 (32%), Positives = 24/74 (32%)
Frame = +2
Query: 650 GPPPXXKGXXKXXXXGKLGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPP 829
G PP G G G P PP P LPP P PGG PP
Sbjct: 718 GLPPITGGPPPPPPPG--GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG-----CPP 770
Query: 830 LXXPPXPPGXXXFP 871
PP P G P
Sbjct: 771 PPPPPPPGGFKGGP 784
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.35
Identities = 21/68 (30%), Positives = 21/68 (30%)
Frame = +2
Query: 653 PPPXXKGXXKXXXXGKLGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPPL 832
PPP G G P P PP PP P P G PP
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP- 368
Query: 833 XXPPXPPG 856
PP PPG
Sbjct: 369 --PPPPPG 374
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/74 (32%), Positives = 24/74 (32%)
Frame = +2
Query: 650 GPPPXXKGXXKXXXXGKLGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPP 829
G PP G G G P PP P LPP P PGG PP
Sbjct: 301 GLPPITGGPPPPPPPG--GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG-----CPP 353
Query: 830 LXXPPXPPGXXXFP 871
PP P G P
Sbjct: 354 PPPPPPPGGFKGGP 367
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/67 (28%), Positives = 20/67 (29%)
Frame = +2
Query: 653 PPPXXKGXXKXXXXGKLGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPPL 832
PPP KG G P PP P + PP P GG
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPP--PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 296
Query: 833 XXPPXPP 853
PP PP
Sbjct: 297 PPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/67 (28%), Positives = 20/67 (29%)
Frame = +2
Query: 653 PPPXXKGXXKXXXXGKLGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPPL 832
PPP KG G P PP P + PP P GG
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPP--PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 317
Query: 833 XXPPXPP 853
PP PP
Sbjct: 318 PPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/67 (28%), Positives = 20/67 (29%)
Frame = +2
Query: 653 PPPXXKGXXKXXXXGKLGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPPL 832
PPP KG G P PP P + PP P GG
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPP--PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 302
Query: 833 XXPPXPP 853
PP PP
Sbjct: 303 PPPPPPP 309
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/72 (29%), Positives = 25/72 (34%)
Frame = +2
Query: 656 PPXXKGXXKXXXXGKLGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPPLX 835
PP G + G+ P P P P +PP P P G +PP
Sbjct: 245 PPPLMGMAQSGYQGQY-PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSG---MWPP-- 298
Query: 836 XPPXPPGXXXFP 871
PP PPG P
Sbjct: 299 PPPPPPGRTPGP 310
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/72 (29%), Positives = 25/72 (34%)
Frame = +2
Query: 656 PPXXKGXXKXXXXGKLGXPXPXXXPPFXPXKNXLPPXXXXXFXXSPXPGGGXXXXFPPLX 835
PP G + G+ P P P P +PP P P G +PP
Sbjct: 255 PPPLMGMAQSGYQGQY-PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSG---MWPP-- 308
Query: 836 XPPXPPGXXXFP 871
PP PPG P
Sbjct: 309 PPPPPPGRTPGP 320
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +3
Query: 729 PPXXPPKTXYHXPXGXXFXFPPXXXXVXXRFSPX*XXPPXPP 854
PP PP T P G PP FSP PP PP
Sbjct: 1357 PPPPPPPTMSKAPTGVPLPVPPPPPL----FSPSMILPPPPP 1394
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Frame = +2
Query: 653 PPPXXKGXXKXXXXGKLGXPXPXXXPP--FXPXKNXLPPXXXXXFXXSPXPGGGXXXXFP 826
PPP G +G P P PP F P K PP F P P
Sbjct: 708 PPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPP-PPMFQQGFNAGAPPPPFGRGAGP 766
Query: 827 PLXXPPXPPG 856
PP P G
Sbjct: 767 MSSFPPPPRG 776
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,010,584
Number of Sequences: 27780
Number of extensions: 294259
Number of successful extensions: 474
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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