Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_B04
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    92   8e-20
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    45   1e-05
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    30   0.50 
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    28   2.0  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   2.7  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    27   3.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   4.6  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   8.1  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 92.3 bits (219), Expect = 8e-20
 Identities = 47/76 (61%), Positives = 51/76 (67%)
 Frame = +2

Query: 545 PIRIPVGAETLXRIINVIGEPIDERGSIPTDKTAAIHAXAPEFVDMSVXHEXLXTGIKVV 724
           PI IPVG  TL RI+NVIGEP+DERG I   K + IHA AP F + S   E L TGIKVV
Sbjct: 128 PISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVV 187

Query: 725 XLLPPYAXRAXIGLFG 772
            LL PYA    IGLFG
Sbjct: 188 DLLAPYARGGKIGLFG 203



 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 34/47 (72%), Positives = 37/47 (78%)
 Frame = +1

Query: 424 DLPALVLEVAQHLGENTVRTIAMDXTEGLVRGQXVLDSGSTHSYPGG 564
           D   LVLEVAQH+GENTVRTIAMD TEGLVRG  V+D+GS  S P G
Sbjct: 88  DNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIPVG 134


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 19/64 (29%), Positives = 34/64 (53%)
 Frame = +2

Query: 548 IRIPVGAETLXRIINVIGEPIDERGSIPTDKTAAIHAXAPEFVDMSVXHEXLXTGIKVVX 727
           + +PVG   L R+++ +G PID +G I T +   +   AP  +  +   E + TG+K + 
Sbjct: 123 VDVPVGEALLGRVVDALGNPIDGKGPIKTTERRRVQLKAPGILPRTSVCEPMQTGLKAID 182

Query: 728 LLPP 739
            + P
Sbjct: 183 SMVP 186


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 36  LRFILPFPPSLPHTARIPPIGTGRIVT*RICDFRNQFDPTL 158
           L+  +P P S P    IP  GT  +V+   C F  +F+P +
Sbjct: 165 LQTCIPLPQSAPWPTTIPLHGTLEVVSCTRCSFLKKFNPDI 205


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +2

Query: 548 IRIPVGAETLXRIINVIGEPIDERGSIPTDKTAAIHAXAPEFVDMSVXHEXLXTGIKVVX 727
           +RIPV  + L R+ N  G PID+  ++  +    I+             E + TGI  + 
Sbjct: 96  MRIPVSEDMLGRVFNGSGLPIDKGPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSID 155

Query: 728 LLPPYAXRAXIGLF 769
            L   A    I +F
Sbjct: 156 GLNSIARGQKIPIF 169


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 191  DNIFENLVERQQSRIELVTKITNSLRNDPSSADGRDA 81
            D +FEN   +  + +++ +K+T+ +R+D  S D  DA
Sbjct: 1337 DTVFENTDLKYDNNVQM-SKVTHHVRHDTISTDDYDA 1372


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -1

Query: 456 LRHLQDQGGEIDFA---PQGHLGSAASCLQTEHPLRHQ*RQLP 337
           L  LQD  G    A     G  GSA SCL   H L H  +Q P
Sbjct: 121 LEFLQDDNGRRVAAFGYHAGFAGSAISCLVWAHQLLHPNKQFP 163


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 173 LVERQQSRIELVTKITNSLRNDPSSAD 93
           LVER  SR+E+V +  +SL N  + AD
Sbjct: 889 LVERANSRVEVVHERLSSLENQVTIAD 915


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 289 TAAPVTSDAFSVALFTTVLVAKRPTLQT 206
           T + VTS+A S A    V  +K+P L+T
Sbjct: 521 TESAVTSEALSAARLEAVKASKKPPLRT 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,412,016
Number of Sequences: 5004
Number of extensions: 67972
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)