Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_B04
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 111 5e-25
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 46 4e-05
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 46 4e-05
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 35 0.066
Z54342-1|CAA91143.1| 505|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z68003-2|CAA91976.2| 560|Caenorhabditis elegans Hypothetical pr... 28 7.6
U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical p... 28 7.6
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 111 bits (268), Expect = 5e-25
Identities = 56/85 (65%), Positives = 61/85 (71%)
Frame = +2
Query: 518 GXPYSTLAQPIRIPVGAETLXRIINVIGEPIDERGSIPTDKTAAIHAXAPEFVDMSVXHE 697
G P + PI+IPVG ETL RI+NVIGEPIDERG I + AAIHA APEFV+MSV E
Sbjct: 131 GQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQE 190
Query: 698 XLXTGIKVVXLLPPYAXRAXIGLFG 772
L TGIKVV LL PYA IGLFG
Sbjct: 191 ILVTGIKVVDLLAPYAKGGKIGLFG 215
Score = 62.1 bits (144), Expect = 5e-10
Identities = 29/45 (64%), Positives = 33/45 (73%)
Frame = +1
Query: 430 PALVLEVAQHLGENTVRTIAMDXTEGLVRGQXVLDSGSTHSYPGG 564
P L+LEV+QHLG+N VR IAMD TEGLVRGQ V D+G P G
Sbjct: 102 PRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKIPVG 146
Score = 37.5 bits (83), Expect = 0.012
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Frame = +3
Query: 210 CRVGRLATKTVVNNATEKASLVTGAAVNKRDYAAKASXXXXXXXXXXXXXXXXXX----- 374
C + + + NN K + TG A + A K S
Sbjct: 24 CALPAASIRLSSNNVESKKGIHTGVATQQAAAATKVSAKATAANASGRIVAVIGAVVDVQ 83
Query: 375 FEDNLPPILNALEVQNRSPR 434
F++NLPPILN LEV RSPR
Sbjct: 84 FDENLPPILNGLEVVGRSPR 103
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 46.0 bits (104), Expect = 4e-05
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 548 IRIPVGAETLXRIINVIGEPIDERGSIPTDKTAAIHAXAPEFVDMSVXHEXLXTGIKVVX 727
+ +PVG L R+++ +G PID +G I + + + AP + E + TG+K V
Sbjct: 96 VDVPVGDGLLGRVVDALGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVD 155
Query: 728 LLPP 739
L P
Sbjct: 156 SLVP 159
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 46.0 bits (104), Expect = 4e-05
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 548 IRIPVGAETLXRIINVIGEPIDERGSIPTDKTAAIHAXAPEFVDMSVXHEXLXTGIKVVX 727
+ +PVG L R+++ +G PID +G I + + + AP + E + TG+K V
Sbjct: 123 VDVPVGDGLLGRVVDALGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVD 182
Query: 728 LLPP 739
L P
Sbjct: 183 SLVP 186
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 35.1 bits (77), Expect = 0.066
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 593 VIGEPIDERGSIPTDKTAAIHAXAPEFVDMSVXHEXLXTGIKVVXLLPP 739
V+G PID +G I + + + AP + E + TG+K V L P
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVP 151
>Z54342-1|CAA91143.1| 505|Caenorhabditis elegans Hypothetical
protein C08H9.1 protein.
Length = 505
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/82 (26%), Positives = 33/82 (40%)
Frame = -3
Query: 274 TSDAFSVALFTTVLVAKRPTLQTVGNISIIFLKI**KGSKVGSNWLRKSQILYVTIRPVP 95
TS FSV LF + ++ + GN I LK+ N +K + R +P
Sbjct: 4 TSLVFSVLLFDLIFISNCDYIHLPGNSDIPDLKLQSGYLNANENGTQKMFYFLLEARDIP 63
Query: 94 MGGMRAV*GSEGGKGKINLKEF 29
+G + GG G +L F
Sbjct: 64 VGEASLIIWFNGGPGCSSLSAF 85
>Z68003-2|CAA91976.2| 560|Caenorhabditis elegans Hypothetical
protein E02H4.2 protein.
Length = 560
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 170 LNFQKYYRNVSYCLQSRPFGYQDSSKQC 253
L QKYY + Y LQS+P +K C
Sbjct: 130 LPHQKYYNSEQYALQSQPCNQYQMNKLC 157
>U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical
protein R05F9.12 protein.
Length = 955
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = -2
Query: 311 GCIVTFVHSGSSHQ*CFFSSIVYYCLGSQTAYSADSRKHFDNIFENLVERQQSRIELVTK 132
GCI +G + C+F V Y L SQ + + RK+ N + I+L TK
Sbjct: 39 GCIWKEDDTGKNAPWCYFKDGVGYNLDSQQGSTYNLRKNGGP--SNPWGADSTEIKLTTK 96
Query: 131 ITNSLRNDPSSADGR 87
S+ N DGR
Sbjct: 97 SIGSVLNVKIGIDGR 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,138,169
Number of Sequences: 27780
Number of extensions: 400307
Number of successful extensions: 903
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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