Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_B01
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    26   5.5  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   9.6  

>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 422 PIYIFNSFYTKLHRFIHQLEKRACVNSKVSVT 327
           P+ I NS  TK+H+F+  L ++      ++VT
Sbjct: 376 PVEISNSNVTKIHKFLDTLGRQVFTYEALNVT 407


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 192 PLXSPTLSYTRTI-RRRRSVKNSFTEAARGTTIVSTHWPNANRNA*SNRYLRINARS 359
           P    T S  +T  +R+RS +NSF    +  +  ++   N +++   NR L+  A S
Sbjct: 98  PFFPQTASSNKTFSKRKRSSENSFNNRNKAKSSETSDSSNTSQSFKENRALKDTATS 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,647
Number of Sequences: 5004
Number of extensions: 34954
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)