Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_B01
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1125 - 24162298-24162586,24162730-24162783,24162940-241630...    29   4.4  
01_06_0834 + 32302065-32302143,32303136-32303275,32303371-323034...    28   7.6  

>07_03_1125 -
           24162298-24162586,24162730-24162783,24162940-24163035,
           24163149-24163190,24163688-24163756,24164262-24164284
          Length = 190

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 374 HQLEKRACVNSKVSVTLCISVRIRPMCRNDCRSPCSLRK 258
           HQ++K + V  +    L IS+ I P   ND    CS R+
Sbjct: 128 HQVDKDSLVRKQALYILRISLDIFPSSENDAAQQCSRRR 166


>01_06_0834 +
           32302065-32302143,32303136-32303275,32303371-32303436,
           32303867-32303950,32304532-32304699,32305061-32305126,
           32306027-32306452
          Length = 342

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +1

Query: 67  DVMLRSVLFLTTGFLFAACLTSVMSDKPTTK----PICEQAFGNSGPXFRL 207
           D +LR++L   +  +F     + +S  P+      P+CE AFG  G   RL
Sbjct: 51  DALLRNILAFRSHQIFHGIKITKVSPGPSLNFCPYPLCESAFGQEGFGLRL 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,211,028
Number of Sequences: 37544
Number of extensions: 220396
Number of successful extensions: 434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)