Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_A24
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    30   1.8  
U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern...    29   4.1  
Z99273-1|CAB16477.1|  645|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z82256-4|CAB05118.1|  636|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF125442-11|AAD12791.1|  624|Caenorhabditis elegans Hypothetical...    28   9.5  

>Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical
           protein T13H5.2 protein.
          Length = 408

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 511 IRTPTFLPVVWSRXSSVTKXQTSDSKQRSAHDW 609
           + TPTF+ V+WS  S     QT    +   +DW
Sbjct: 213 VNTPTFIQVLWSMISPCLAKQTQQKVKILGNDW 245


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/60 (35%), Positives = 25/60 (41%)
 Frame = +2

Query: 239 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLDWG 418
           GGG   G  G   DG +G  G+         G + G  YG   +G GG    YGG  D G
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGGGGDGG 222


>U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical
           protein C32D5.11 protein.
          Length = 770

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 300 PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGCRLEGC 190
           P  P SPS+      + L   ICLS   S+ CR+EGC
Sbjct: 50  PVIP-SPSTSSNNPVEELQCTICLSTRFSQECRIEGC 85


>Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical
           protein Y41E3.2 protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 633 LYRC*GDHPIMGGSLLGVRRLXF-CDRTXSRPYHRQKSGCSYPDP 502
           LY C G    +  S+  +R L    +RT    Y+ Q +GC  P P
Sbjct: 50  LYACKGSAKDVWNSVYSIRELPLSANRTARSTYNEQCAGCCLPGP 94


>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
           (werner's syndrome) relatedprotein 1 protein.
          Length = 1056

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 319 KDLSVVTSFSKESIIVLSQSAKDLASP-HLFVPSDVTRVSP*GLPPDRIIFCVIKRSVN 146
           K L   TSF ++++ +   S+KD+A    LF+ +D  +    G P   II+C  K+ V+
Sbjct: 404 KPLITTTSFDRKNLYISVHSSKDMAEDLGLFMKTDEVKGRHFGGP--TIIYCQTKQMVD 460


>Z99273-1|CAB16477.1|  645|Caenorhabditis elegans Hypothetical
           protein Y45F10C.1 protein.
          Length = 645

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 186 GGSPQGDTLVTSLGTNKWGEARSLALWDKTMMDSLEKLVTTERSLMTTAAN*PVR 350
           G +P  D L T     KW +   LA + K + + +EKL   E+++M    N  VR
Sbjct: 581 GSTPAKDFLKTLTHFLKWMKVPLLASFLKKVEEEIEKLGDIEQNVMIGDVNQQVR 635


>Z82256-4|CAB05118.1|  636|Caenorhabditis elegans Hypothetical
           protein B0513.6 protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 186 GGSPQGDTLVTSLGTNKWGEARSLALWDKTMMDSLEKLVTTERSLMTTAAN*PVR 350
           G +P  D L T     KW +   LA + K + + +EKL   E+++M    N  VR
Sbjct: 572 GSTPAKDFLKTLTHFLKWMKVPLLASFLKKVEEEIEKLGDIEQNVMIGDVNQQVR 626


>AF125442-11|AAD12791.1|  624|Caenorhabditis elegans Hypothetical
           protein H04M03.1 protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 352 LRHQSFRTWRRQHQLRRTPRLGRT 423
           L+H     W   H   RTPR G+T
Sbjct: 266 LKHDDQEVWAHGHSFGRTPRYGKT 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,727,908
Number of Sequences: 27780
Number of extensions: 381631
Number of successful extensions: 984
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)